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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00464 ATGTTAATCTGTGAAAAGGATCCATACCCACCCTCGTATTGTCTACAAGAGAGTTTTATTACAGTATGTGTTATTTATAGATATATTTTTAAAATGTTATATGTTATGTTATATAGATATTATTTTGCTTATATTTGTTGTTATTTGATCTTTACAAGGAATGATGACAAGAACGACCAACGACAGGGTGAACCGAAGCAATCATCAAAGAGTATTGAGATCTTTGAAGATGAGGAGGATGATCAATCTGTACCCATGGTTTTGGTTGTTGGAGGTGGAGATGGTGGCGTCTTGCGTGAAGTAGCTCGCCATTCTTCTGTTGAGCACGTTGATATTTGTGAGATCGATAAGATGGTCGTTCATGTGAGTAATCATGATGTTAGAAATTTTGAAAGGTCTTTTATTTAA 408 34.8 MLICEKDPYPPSYCLQESFITVCVIYRYIFKMLYVMLYRYYFAYICCYLIFTRNDDKNDQRQGEPKQSSKSIEIFEDEEDDQSVPMVLVVGGGDGGVLREVARHSSVEHVDICEIDKMVVHVSNHDVRNFERSFI 135
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00464 135 ProSiteProfiles Polyamine biosynthesis (PABS) domain profile. 87 135 IPR030374 -
Hean1g00464 135 MobiDBLite consensus disorder prediction 56 80 - -
Hean1g00464 135 PANTHER SPERMIDINE-SPERMINE SYNTHASE 86 124 IPR001045 GO:0003824(InterPro)
Hean1g00464 135 Gene3D Vaccinia Virus protein VP39 36 134 IPR029063 -
Hean1g00464 135 MobiDBLite consensus disorder prediction 56 73 - -
Hean1g00464 135 SUPERFAMILY S-adenosyl-L-methionine-dependent methyltransferases 87 123 IPR029063 -
Hean1g00464 135 ProSitePatterns Polyamine biosynthesis (PABS) domain signature. 87 100 IPR030373 -
Hean1g00464 135 Pfam Spermine-spermidine synthase domain 86 127 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00464 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:16628229 Hean9g01859 Hean-Chr9:109739461 dispersed
Hean Hean-Chr1:16628229 Hean13g04354 Hean-Chr13:167369559 transposed