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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00472 ATGTCATTCAAGGAGTTTCAAGACTGTAAGGCACTCCTTGATATGCTGGATGATGAAGAGTATGTTATGAAATACAAGTATTATCTCGAAAACAAGTTTAATGATATGGTTGATTGGTTTCTCAAGGAGAAATTAGAAATCACCACAAGACCACTACTTGCGTATGCATCGGACAACCGAAAAATATGTCTCTTAGACCTGTACATGGCTGTCAAAAAAGAGAGTGGACACCGAAGGATTACTGAAAACAATATGTGGGCAATGATTGCCAAGGATCTAGGTTTTGATTATGATGATGGAGAGTATTTGAGGCTGATATATGCTATGTATTTGGACGTGCTGATTTACCATTATAAAAACAAGTCAACTCAAGAAAAGGTGCATGAGAAAGAGGAGGTCAAGACGGTGGTTGATCCAAGACGAAGCAGGAGTGAAGAAGACAGAATGTTAGGAAATGAAGCATATCAATCGGAAGGCAACTCAAAGAATGAAGATACTGCTGGGAAGGAGACTGAGCACTACGCGTTTTTCGCCGGCAACGATTGGCAAGGAATCAAAAGGCTGCATACTAGGAGGAGGTTCAACTTCAATCGAGCAAAAGCAGCCGTGGATGATGCCAACAAAAGTGTGTTAATGCACTCTCACAAACATAATTATGTTTAG 663 40.27 MSFKEFQDCKALLDMLDDEEYVMKYKYYLENKFNDMVDWFLKEKLEITTRPLLAYASDNRKICLLDLYMAVKKESGHRRITENNMWAMIAKDLGFDYDDGEYLRLIYAMYLDVLIYHYKNKSTQEKVHEKEEVKTVVDPRRSRSEEDRMLGNEAYQSEGNSKNEDTAGKETEHYAFFAGNDWQGIKRLHTRRRFNFNRAKAAVDDANKSVLMHSHKHNYV 220
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00472 220 Gene3D - 19 137 IPR036431 GO:0003677(InterPro)
Hean1g00472 220 MobiDBLite consensus disorder prediction 135 152 - -
Hean1g00472 220 Pfam ARID-BRIGHT DNA binding domain 34 111 IPR001606 GO:0003677(InterPro)
Hean1g00472 220 ProSiteProfiles ARID domain profile. 27 119 IPR001606 GO:0003677(InterPro)
Hean1g00472 220 CDD ARID 30 111 - -
Hean1g00472 220 SUPERFAMILY ARID-like 56 114 IPR036431 GO:0003677(InterPro)
Hean1g00472 220 PANTHER AT-RICH INTERACTIVE DOMAIN-CONTAINING PROTEIN 2 1 156 - -
Hean1g00472 220 MobiDBLite consensus disorder prediction 135 167 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00472 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr14:118153122 Hean1g00472 Hean-Chr1:16719576 dispersed
Hean Hean-Chr1:16719576 Hean6g01642 Hean-Chr6:41088600 dispersed
Hean Hean-Chr1:16719576 Hean1g03716 Hean-Chr1:146171029 transposed
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hean ARID 1.1e-07 CL0123 TR ARID