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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00476 ATGAACATTATTTACCGTGAGAGAGAGAGAGAGAAGAAGATGAGCAAGGAGAGGTTGGCGGGGCTGGCTCAGCAGCTCCGGATTTACAAGGTACCGGTGGCGGCTGATGATGATGATGACGATGCAGTGGGTCAGCCCTCAGAAGGATTCAGACCTAAGAAAGCGGTTGTTTTGATCTGCCTTTTCGAACAAAATAATAATGAGGGGATTCGCGTGATTCTTACCAAAAGATCTTCTCGCCTCTCCACACATTCAGGTGAAGTCGCTTTTCCTGGAGGGAAGGCCGAGGAAGATGACGTAGATGACGCTGACACAGCCACTAGGGAAGCACACGAAGAGATTGGTCTCCATCCTTCCCTCGTAGATGTTCATCTTCTGCGGGTAATCCCTGTAATTGGCATACTTTCTGACAGAGATGCCTTCAATCCTACTCCTAATGCTGCTGAAGTAGATGATGTCTTTGATGCTCCTTTGGAAATGTTTCTAAAGGATGAAAACCAAAGATCTGAAAAGAGAGAATGGATGGGAGAGGAGTATCTGGTTCATTATTTTGACTACCAACACCACCAGCAGCAGCAGCATCAGGTGGTGGTGGTAATAAGAAATATCTTATTTGGGGTCTAA 624 46.31 MNIIYREREREKKMSKERLAGLAQQLRIYKVPVAADDDDDDAVGQPSEGFRPKKAVVLICLFEQNNNEGIRVILTKRSSRLSTHSGEVAFPGGKAEEDDVDDADTATREAHEEIGLHPSLVDVHLLRVIPVIGILSDRDAFNPTPNAAEVDDVFDAPLEMFLKDENQRSEKREWMGEEYLVHYFDYQHHQQQQHQVVVVIRNILFGV 207
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00476 207 SUPERFAMILY Nudix 48 185 IPR015797 -
Hean1g00476 207 CDD CoAse 53 186 IPR045121 GO:0010945(InterPro)
Hean1g00476 207 ProSiteProfiles Nudix hydrolase domain profile. 52 199 IPR000086 -
Hean1g00476 207 Pfam NUDIX domain 55 180 IPR000086 -
Hean1g00476 207 FunFam Nudix hydrolase 11 35 207 - -
Hean1g00476 207 Gene3D Nucleoside Triphosphate Pyrophosphohydrolase 38 204 - -
Hean1g00476 207 PANTHER NUDIX HYDROLASE 15 196 IPR045121 GO:0010945(InterPro)|GO:0015938(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00476 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:142987128 Hean1g00476 Hean-Chr1:16789940 dispersed
Hean Hean-Chr16:146630024 Hean1g00476 Hean-Chr1:16789940 dispersed
Hean Hean-Chr17:135069883 Hean1g00476 Hean-Chr1:16789940 dispersed
Hean Hean-Chr1:16777818 Hean1g00476 Hean-Chr1:16789940 proximal