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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00506 ATGGGATCATCGTTGAAAGAAAAACTGAATACCTTCAACAGGCAACAACAAAAATGTCAGTCAGACCTTACGAGCATTGCGGCTTCTACAAGGACAGCAGCACCTGCAAGGAAATCACCTGTTCCTGCAGTAAGGTTGCAGCAACTTATTAATAATAAAACAAGGAAGACCACTGTGGGAGCTCAAATCAAATGTGTCATCGATCTACTATATAAGTCAAGGCAGTCCTTTACAGCTGAGCAAATAAATGAAGCATGCTATGTTGATGTCAAAGGCAGTAAAGCCGTGTTTGAAAGTTTGACAAAGAACCCGAAAGTTAATTACGATGGAAGCCGTTTCTCTTATAAGTCGAAGCATAGTGTGAGGGACCAGAAACAACTTCTACGCCTGATACAGACATTTGCAGAGGGTATTGCGGTTGCTGATCTTAAAGATGCATACCCAACTGTCATGGAAGATTTACAGGTCCTGAAAGCTGGTCGTCAGATATGGCTACTATCAACTATCGACGCCCAGAAAGAGATAGCGTACCCAAATGATCCGAGGGTCCCCATCAAGGTCGATGATGAACTGAAAGAGTTATTTAGGTCGATTAAGTTGCCACCAGACATGCTGGACATTGAGCAGGACCTACAGAAAAATGGGATGAAGCCCGCAACAAACACAGCTAAAAGAATAGTGATGGCTCAGAATGGTAATATTTTGGTTGAACCAAAACAGGAGAAGAAGACTGGGTTCAGTAAAAGGACAAAACTCACCAATGCTCATCTTCCTGAGCTCTTCCAAACTTGA 792 42.68 MGSSLKEKLNTFNRQQQKCQSDLTSIAASTRTAAPARKSPVPAVRLQQLINNKTRKTTVGAQIKCVIDLLYKSRQSFTAEQINEACYVDVKGSKAVFESLTKNPKVNYDGSRFSYKSKHSVRDQKQLLRLIQTFAEGIAVADLKDAYPTVMEDLQVLKAGRQIWLLSTIDAQKEIAYPNDPRVPIKVDDELKELFRSIKLPPDMLDIEQDLQKNGMKPATNTAKRIVMAQNGNILVEPKQEKKTGFSKRTKLTNAHLPELFQT 263
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00506 263 PANTHER TRANSCRIPTION INITIATION FACTOR IIE, BETA SUBUNIT 1 262 IPR016656 GO:0001097(PANTHER)|GO:0005673(InterPro)|GO:0005673(PANTHER)|GO:0006367(PANTHER)|GO:0006367(InterPro)
Hean1g00506 263 ProSiteProfiles TFIIE beta central core DNA-binding domain profile. 48 122 IPR003166 GO:0006367(InterPro)
Hean1g00506 263 Pfam TFA2 Winged helix domain 2 122 179 IPR040501 -
Hean1g00506 263 PIRSF TFIIE-beta 2 263 IPR016656 GO:0005673(InterPro)|GO:0006367(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00506 K03137 transcription initiation factor TFIIE subunit beta
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:20139758 Hean1g02671 Hean-Chr1:124753574 dispersed