AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00518 ATGCCTCCTCGACGCGACAATCAGATGGCGAATGCCGAACTGGCGGAAATCATCGCGCAACAAATGGCTGCTGCCTTCCCAATTCTTTATGCTCAAATAACTCAAGCCATCAACAACAACAATGCTCCATGCAATTTCAAGGTTTTTAACTCAGCTAAACCGCTCAAGTTCAATGGTTCTGAGGGAGCAACTGGTCTTCTTCAATGGTTCGAGAGCATTGAGAATACTTTCCGTCACGTTCAGTGTCCTGAAAATCGCAAGGTCGAGTTTTCTTCGAGTGTGTTTCAGAAGAGGGCTCTTACATGGTGGAACGGGGTTATGAGAGACCGCGGTGCAGAGGTTGCATTAGCACAGACTTGGGCCGAGCTTAGGGCTCTTATGATGAAGGAGTTCTGTCCTCGTCATGAGCTTAGGGCTCTAGAAAGGGAATTTGATGATTTAAAGCAAGACAGTGGGGAACATCGAGCCTATACTGATCGCTATGAGGAATTGAGCTTGTTATGCCCTACTATGGTTACGCCTCTGGATAAGGCGATTGAGAAATACATTGATGGACTTCCTGACGTAGTTCAGGACATCGTTACTGGCAGCAACCCTACTACTGTCAGACAAGCCATTGAATTGGCTGCCACTCTGACTGAATCCCAAATCAGGAAGCACAAGCTGTTTCGGAAGGGCGACTTAAGACCATCTGACAAGACTGCTCATGTGGAAACAAAGGAAGAAAGTACTGAGGTGCCCAAGAAGAAAAAGCGCAAAGCCTCTCAAAGCTACGCTGTAACTGCTCAAGACAAACAAGTTGCACCAAACCAGCCAACACAACCTCGTAAAAGACAAAACTATGTTGGTACTGCACCGTTGTGCAACAAATGCAACCGTCATCATCTAGAGCAAGAGCAGTGTCACAAATGTACCCACTGTGGGCGGTTGGGACATTTGATCAATGTTTGTCGTTATGCAAATCAAGCTGCTGCAAACCCTGCTGCTGTTCAAGCACGGTTCCCCCCAGGGTCATGTTATAACTGTGGTGACCTTACCCACTACAGGAACAATTGCCCAAGGCTTGTTAACATACCTCCAGCGCGTGGACGAGTGTTCAACATCAATGAGGCAAACATGAACAATGATGCAGCAGTGAACAATTAG 1146 46.95 MPPRRDNQMANAELAEIIAQQMAAAFPILYAQITQAINNNNAPCNFKVFNSAKPLKFNGSEGATGLLQWFESIENTFRHVQCPENRKVEFSSSVFQKRALTWWNGVMRDRGAEVALAQTWAELRALMMKEFCPRHELRALEREFDDLKQDSGEHRAYTDRYEELSLLCPTMVTPLDKAIEKYIDGLPDVVQDIVTGSNPTTVRQAIELAATLTESQIRKHKLFRKGDLRPSDKTAHVETKEESTEVPKKKKRKASQSYAVTAQDKQVAPNQPTQPRKRQNYVGTAPLCNKCNRHHLEQEQCHKCTHCGRLGHLINVCRYANQAAANPAAVQARFPPGSCYNCGDLTHYRNNCPRLVNIPPARGRVFNINEANMNNDAAVNN 381
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00518 381 PANTHER LDOC1 RELATED 36 275 IPR032567 -
Hean1g00518 381 MobiDBLite consensus disorder prediction 223 279 - -
Hean1g00518 381 Gene3D - 297 355 - -
Hean1g00518 381 MobiDBLite consensus disorder prediction 223 252 - -
Hean1g00518 381 ProSiteProfiles Zinc finger CCHC-type profile. 339 354 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00518 381 SUPERFAMILY Retrovirus zinc finger-like domains 332 358 IPR036875 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00518 381 Pfam Retrotransposon gag protein 93 187 IPR005162 -
Hean1g00518 381 SMART c2hcfinal6 303 319 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00518 381 SMART c2hcfinal6 338 354 IPR001878 GO:0003676(InterPro)|GO:0008270(InterPro)
Hean1g00518 381 MobiDBLite consensus disorder prediction 256 279 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00518 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:20722074 Hean2g01491 Hean-Chr2:86559788 dispersed
Hean Hean-Chr1:20722074 Hean4g02117 Hean-Chr4:103333446 transposed