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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00536 ATGGATAAATCCAAGCGAACTTTTCTTAAATCCAAGCGATCTTTTCGTAAGCGTTTGCCCCCGATCCAATCGGGGGATCGAATTGATTATAAAAACATGAGTTTAATTAGTCGATTTATTAGTGAACAGGGAAAAATATTATCTAGACGAGTAAATAGATTGACCTTGAAACAACAACGATTAATTACTATTGCTATAAAACAAGCTCGTATTTTATCTTTGTTACCTTTTCTTAATAATGAGAAACAATTTGAAAGAACCGAGTCGACCACTAGAACTCCTAGTCTTAGAGCTAGAAAAAGATAG 306 33.66 MDKSKRTFLKSKRSFRKRLPPIQSGDRIDYKNMSLISRFISEQGKILSRRVNRLTLKQQRLITIAIKQARILSLLPFLNNEKQFERTESTTRTPSLRARKR 101
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00536 101 PANTHER 30S RIBOSOMAL PROTEIN S18 9 87 IPR001648 GO:0003735(InterPro)|GO:0003735(PANTHER)|GO:0005840(InterPro)|GO:0006412(InterPro)|GO:0006412(PANTHER)|GO:0070181(PANTHER)
Hean1g00536 101 NCBIfam 30S ribosomal protein S18 22 79 IPR001648 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 PRINTS Ribosomal protein S18 family signature 35 45 IPR001648 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 PRINTS Ribosomal protein S18 family signature 67 77 IPR001648 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 PRINTS Ribosomal protein S18 family signature 53 67 IPR001648 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 PRINTS Ribosomal protein S18 family signature 45 52 IPR001648 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 ProSitePatterns Ribosomal protein S18 signature. 28 51 IPR018275 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 Gene3D Ribosomal protein S18 21 84 IPR036870 -
Hean1g00536 101 Hamap Small ribosomal subunit protein bS18 [rpsR]. 12 80 IPR001648 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 FunFam 30S ribosomal protein S18, chloroplastic 21 84 - -
Hean1g00536 101 Pfam Ribosomal protein S18 26 75 IPR001648 GO:0003735(InterPro)|GO:0005840(InterPro)|GO:0006412(InterPro)
Hean1g00536 101 SUPERFAMILY Ribosomal protein S18 15 81 IPR036870 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00536 K02963 small subunit ribosomal protein S18
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:113963157 Hean1g00536 Hean-Chr1:24495220 dispersed
Hean Hean-Chr1:24495220 Hean4g00040 Hean-Chr4:880442 dispersed
Hean Hean-Chr1:24495220 Hean1g01949 Hean-Chr1:91350090 transposed