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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00539 ATGGAAACTTCTCTAGACTCAATCCATCTTTTGGTTAATAAAGTGAAGGAAGAGATGTTTTCACGAGTAAAATCTGAGCATCTTCAATCATTTGTTTCACCATCTGCATATGACACTGCGTGGGTAGCAATGATTCCTCACCCAGTGGAACATAACACCCCATTGTTTAAGGGCTGCCTTGAATGGTTAGTCGATAACCAACATGAAGAAGGCTTCTGGGGAGAATCCATTGTTGATCTTCCGACCATTGATGCTCTTCCTACTACTATTGCTTGCATGGCTGTGCTCCAAAAGTGGGGACTCGGTGCAAAAAACATAGAAAAAGGGTTGAATTTTATACAAGCAAATATGGTGGAGATGCTTCATGGCCATGGTCCTCGTCTTCCTCGCTGGTTCTCTATTGTTTTCCCCGCAGCTATTGAGCTTGCGGAATCAACAGGTTTAGAACTTCAGTTCAGTGATCAGACGAAGTCACTAATTGCTGACATATCCGATCGAAGGGAAAAAATTATTAGCATGGAAAAGATTGTTGATAAATGGCAGAACCTTCCATTACTGGCTTACCTAGAGACACTTCAGTCAACAAAATATCATGTTGATCAAGAAACCATCACAATGCATTTGAGTGAAGATGGCTCACTTTTTCAATCACCAGCAGCTACCGCACAGGCTTACATGTCTACCGGAAACCAAAAGTGCCTTGAGTATCTGAATTCACTTGTTGAAAAATGTCCAAATGGAGTTCCACAAAAGTACCCGATGGATAAGGAACTTGTGGAACTCAGTATGGTTGATCAAGTGCAGAGGCTAGGCTTATCCGAGTATTTTTCGGATGAGATTGATTACATCCTTAGAAAAGTATACAGGAGTTATAAGGTCCAAGAATATTCACCGAAAGATTACAGGACCATGGCTGAAAAGTTATACAAGGACTCCTTAGCTTTTCGACTTTTTCGTATGCATGGGTATAATATATGCCCAAGTACCTTTTGTTGGTTCTTACAAGATGATGAAATCTTGCGTCACCTAGAGCACAACTATGGACAATTTACAAGCTTATTGTATAGTGTTTATAAGGCGACAGATGTTATCTTCTTTGAAGAAACTGAAGTGCATGAGGCAAGATCATTTTCCAGAAAAATGCTTCAGAAAATCTCGGCCACAAAAAACATACATTATGACAATATTGTCATATTCCCCAATTTATTGCAAATGATTTGTGAAGAGCTGAGCACACCATGGATTGCCAGACTTGAGCATCTTGATCAAAGGATGTGGATTGAACAAAACAAAGAAGGACCATTGTGGATTGGGAAGGCCTCTTTTTATAGATTGTCATGTGTTCATAATATGGACCTCATGCAACTTGCACTACAGAATTACAAGTTCAAGCAGCTAATTTACCAAAATGAACTAGAAGAACTAAAAAGGTGGTCCAAGAAGTGGGGACTTACTGAAATGGGATTTGGTCGAGAGAAAACATTGTATTGCTACTTTGCTATTTCAGCTAGTACTTCTTTACCTCATGATTCTCTTATACGCATGTTGGTGGCAAAAAGTGCGATCTTGATTACTGTTGCAGACGATTTCTTCGATATGAGAGGCACTCTAGAAGAGTTGCACCTTTTGATGGATGCTATTAATAGATGGGACGGAAATGGTTTAAGTGGACCAAGCAAGGTGATCTTCGATGTGTTGGATGATCTTGTGAAAGATGTTACAAAGACGTTGGTCCTTCGCGGAAAGATCGACTTAACAGAAGATTTTAGAGGCCTGTGGAGAGAGACATTCAACTCATGGTTAACAGAAACTACATGGGGAAAGAGTGGCTACATCCCTTCAGTGGATGAATACTTGCAAACTAGTATGATCTCCATTGCTACACATGTCTTGGTGCTGACTTCCTCATGTTTCCTGAATCCAAGCTTACCTGAAAACAAAGTCAAGCCACAAGTATATGAGAACATAACACAATCACTAATGGCTACTACTCGACTACTAAACGACATTCAAAGTTACCAGAAGGAAAAAGAAGAGGGAACAATGAACCTTGTGTTGCTTCATTTCAACCAAAACCCAAATGCAAGCATGGATTGTTCAATCTCTGAAGTGAAAAAGTTGCTAGAGGAAAAAAGGAATGAGTTGCTCAAACATGTTTTTACAGATGATGATGATGGTGATTTTCTTAACCAATGGAGGCACCTTCATTTGTCGTGCTTCAAGGTGTTTCAGATGTTATTTAACTCTGGAAACCTATATGATACAGACTTTGAACTACAGTCAGACATTGAGAAAGCCATTTATGTTTCCCCAAAGCCTGAATTTCCCAAATATATACAGCCAAATACAACTTTCTATGCAGCTCCAAAAAAGAACAACATGATGATCAGTGCTAAGTATGTTCAAATCCCTAATCGACATCTTTCTAAAAAGGCCATGTGTAATGTGGGCTCTACAGTGCTAAACTCAACTACCTTTGGCTTATGCTTCATATAA 2496 39.46 METSLDSIHLLVNKVKEEMFSRVKSEHLQSFVSPSAYDTAWVAMIPHPVEHNTPLFKGCLEWLVDNQHEEGFWGESIVDLPTIDALPTTIACMAVLQKWGLGAKNIEKGLNFIQANMVEMLHGHGPRLPRWFSIVFPAAIELAESTGLELQFSDQTKSLIADISDRREKIISMEKIVDKWQNLPLLAYLETLQSTKYHVDQETITMHLSEDGSLFQSPAATAQAYMSTGNQKCLEYLNSLVEKCPNGVPQKYPMDKELVELSMVDQVQRLGLSEYFSDEIDYILRKVYRSYKVQEYSPKDYRTMAEKLYKDSLAFRLFRMHGYNICPSTFCWFLQDDEILRHLEHNYGQFTSLLYSVYKATDVIFFEETEVHEARSFSRKMLQKISATKNIHYDNIVIFPNLLQMICEELSTPWIARLEHLDQRMWIEQNKEGPLWIGKASFYRLSCVHNMDLMQLALQNYKFKQLIYQNELEELKRWSKKWGLTEMGFGREKTLYCYFAISASTSLPHDSLIRMLVAKSAILITVADDFFDMRGTLEELHLLMDAINRWDGNGLSGPSKVIFDVLDDLVKDVTKTLVLRGKIDLTEDFRGLWRETFNSWLTETTWGKSGYIPSVDEYLQTSMISIATHVLVLTSSCFLNPSLPENKVKPQVYENITQSLMATTRLLNDIQSYQKEKEEGTMNLVLLHFNQNPNASMDCSISEVKKLLEEKRNELLKHVFTDDDDGDFLNQWRHLHLSCFKVFQMLFNSGNLYDTDFELQSDIEKAIYVSPKPEFPKYIQPNTTFYAAPKKNNMMISAKYVQIPNRHLSKKAMCNVGSTVLNSTTFGLCFI 831
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00539 831 Pfam Terpene synthase, N-terminal domain 210 390 IPR001906 GO:0010333(InterPro)|GO:0016829(InterPro)
Hean1g00539 831 SUPERFAMILY Terpenoid synthases 449 748 IPR008949 -
Hean1g00539 831 FunFam cis-abienol synthase, chloroplastic 465 772 - -
Hean1g00539 831 SFLD Terpene Cyclase Like 1 N-term 9 445 - -
Hean1g00539 831 PANTHER ENT-COPALYL DIPHOSPHATE SYNTHASE, CHLOROPLASTIC 8 769 IPR050148 GO:0000287(PANTHER)|GO:0010333(PANTHER)|GO:0016102(PANTHER)
Hean1g00539 831 Gene3D Farnesyl Diphosphate Synthase 465 772 IPR008949 -
Hean1g00539 831 Gene3D - 27 461 IPR036965 GO:0010333(InterPro)|GO:0016829(InterPro)
Hean1g00539 831 Gene3D - 33 241 - -
Hean1g00539 831 FunFam Ent-copalyl diphosphate synthase, chloroplastic 232 461 - -
Hean1g00539 831 SUPERFAMILY Terpenoid cyclases-Protein prenyltransferases 211 429 IPR008930 -
Hean1g00539 831 Pfam Terpene synthase family, metal binding domain 480 713 IPR005630 GO:0000287(InterPro)|GO:0010333(InterPro)|GO:0016829(InterPro)
Hean1g00539 831 SUPERFAMILY Terpenoid cyclases-Protein prenyltransferases 34 117 IPR008930 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00539 K17982 geranyllinalool synthase [EC:4.2.3.144]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:24949565 Hean3g00195 Hean-Chr3:8394642 dispersed
Hean Hean-Chr1:24949565 Hean13g01562 Hean-Chr13:78761553 transposed
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean17g00362 . 7 547 TPS gene family AT5G23960 37.818 3.03e-123 373.0
Hean17g00363 . 331 547 TPS gene family AT5G23960 35.321 4.26e-43 150.0
Hean17g00364 . 1 547 TPS gene family AT5G23960 37.79 5.48e-122 369.0
Hean17g00365 . 308 427 TPS gene family AT1G70080 34.167 7.01e-25 99.8
Hean17g00366 . 7 247 TPS gene family AT5G23960 34.921 2.23e-40 144.0
Hean17g00369 . 80 158 TPS gene family AT2G24210 50.0 3.08e-15 68.6
Hean17g00373 . 7 547 TPS gene family AT5G23960 37.205 5.05e-118 360.0
Hean17g01274 . 311 597 TPS gene family AT3G25810 42.014 1.74e-77 244.0
Hean17g01966 . 7 543 TPS gene family AT5G23960 37.477 2.35e-122 370.0
Hean17g01970 . 7 543 TPS gene family AT5G23960 37.843 2.21e-121 369.0
Hean17g02565 . 44 192 TPS gene family AT4G02780 41.935 3.64e-32 120.0
Hean17g02566 . 187 512 TPS gene family AT4G02780 70.245 0.0 526.0
Hean17g02568 . 652 797 TPS gene family AT4G02780 29.114 1.50e-13 65.9
Hean17g03665 . 4 547 TPS gene family AT5G23960 36.563 1.06e-128 386.0
Hean17g03673 . 4 547 TPS gene family AT5G23960 38.462 3.58e-134 399.0
Hean16g02729 . 94 569 TPS gene family AT1G61680 43.763 9.80e-142 418.0
Hean16g02733 . 96 148 TPS gene family AT1G61680 41.379 1.90e-07 45.8
Hean16g02734 . 254 431 TPS gene family AT1G61680 45.604 2.12e-52 175.0
Hean16g02736 . 96 569 TPS gene family AT1G61680 43.326 2.01e-140 413.0
Hean16g03629 . 4 547 TPS gene family AT5G23960 36.709 6.24e-119 361.0
Hean16g03630 . 4 547 TPS gene family AT5G23960 36.347 1.89e-118 360.0
Hean16g03642 . 340 433 TPS gene family AT4G13280 26.0 5.09e-06 42.0
Hean16g03643 . 152 261 TPS gene family AT3G29110 42.727 5.16e-25 96.3
Hean16g03653 . 254 547 TPS gene family AT5G23960 37.162 1.25e-65 213.0
Hean16g03654 . 152 270 TPS gene family AT3G29110 41.176 8.72e-26 98.6
Hean16g03711 . 27 778 TPS gene family AT1G79460 53.51 0.0 812.0
Hean16g03712 . 712 778 TPS gene family AT1G79460 56.716 2.15e-21 83.6
Hean16g03716 . 27 778 TPS gene family AT1G79460 54.04 0.0 818.0
Hean16g03719 . 27 778 TPS gene family AT1G79460 50.066 0.0 741.0
Hean16g03720 . 46 131 TPS gene family AT1G79460 58.621 8.27e-30 111.0
Hean16g03722 . 27 262 TPS gene family AT1G79460 55.042 1.48e-81 261.0
Hean16g03724 . 277 447 TPS gene family AT1G79460 41.86 7.86e-34 123.0
Hean16g03725 . 475 659 TPS gene family AT1G79460 52.973 3.05e-66 214.0
Hean15g00352 WGDA 47 802 TPS gene family AT4G02780 51.16 0.0 784.0
Hean15g01703 . 438 513 TPS gene family AT1G70080 35.526 5.45e-12 58.5
Hean15g01704 . 4 318 TPS gene family AT5G23960 38.245 2.43e-69 224.0
Hean15g01707 . 4 547 TPS gene family AT5G23960 33.029 2.20e-106 327.0
Hean15g03281 . 4 547 TPS gene family AT5G23960 39.744 1.98e-136 405.0
Hean15g03282 . 7 547 TPS gene family AT5G23960 40.074 5.13e-138 409.0
Hean15g03655 . 2 547 TPS gene family AT5G23960 38.434 5.94e-132 394.0
Hean14g00547 . 1 595 TPS gene family AT3G25810 41.584 4.01e-158 464.0
Hean14g00822 . 101 595 TPS gene family AT3G25810 35.529 1.31e-98 311.0
Hean14g00823 . 27 537 TPS gene family AT4G16730 33.074 1.13e-83 267.0
Hean14g00824 . 78 279 TPS gene family AT4G16740 34.426 8.88e-29 112.0
Hean14g00825 . 316 537 TPS gene family AT4G16730 34.061 8.66e-38 135.0
Hean14g01738 . 4 528 TPS gene family AT5G23960 34.906 1.19e-108 333.0
Hean13g01547 . 19 592 TPS gene family AT3G25820 42.931 1.45e-159 470.0
Hean13g01552 . 7 592 TPS gene family AT3G25820 43.697 1.11e-166 486.0
Hean13g01555 . 1 595 TPS gene family AT3G25810 42.623 1.04e-154 455.0
Hean13g01562 . 1 595 TPS gene family AT3G25810 41.857 1.25e-156 460.0
Hean13g01564 . 1 592 TPS gene family AT3G25820 43.522 4.20e-160 471.0
Hean13g01569 . 29 367 TPS gene family AT3G25820 43.103 1.02e-85 270.0
Hean13g01570 . 184 485 TPS gene family AT3G25820 39.604 2.77e-74 236.0
Hean12g00419 . 7 547 TPS gene family AT5G23960 34.807 8.21e-108 330.0
Hean11g00659 . 41 156 TPS gene family AT4G16730 41.026 8.88e-24 95.5
Hean11g00660 . 246 595 TPS gene family AT3G25810 44.286 5.97e-108 326.0
Hean11g01331 . 4 547 TPS gene family AT5G23960 36.116 9.68e-116 352.0
Hean11g01333 . 4 547 TPS gene family AT5G23960 35.688 4.58e-113 345.0
Hean11g02822 . 397 569 TPS gene family AT1G61680 50.857 1.21e-55 183.0
Hean11g02824 . 305 569 TPS gene family AT1G61680 48.689 2.03e-90 276.0
Hean11g02825 . 37 260 TPS gene family AT5G23960 29.13 3.35e-23 95.5
Hean11g02831 . 88 569 TPS gene family AT1G61680 40.984 5.39e-133 399.0
Hean10g00503 WGDA 35 802 TPS gene family AT4G02780 52.363 0.0 801.0
Hean9g00120 . 52 564 TPS gene family AT4G16740 37.333 1.50e-106 330.0
Hean9g02248 . 94 539 TPS gene family AT4G16730 37.444 1.29e-116 350.0
Hean9g02249 . 29 161 TPS gene family AT3G25820 33.333 1.06e-17 77.8
Hean9g02253 . 52 594 TPS gene family AT3G25820 36.972 6.78e-120 364.0
Hean9g02254 . 21 596 TPS gene family AT3G25820 38.276 1.08e-129 391.0
Hean9g02441 . 24 124 TPS gene family AT3G25820 27.184 1.55e-06 43.9
Hean9g02442 . 110 537 TPS gene family AT4G16730 38.695 1.47e-111 337.0
Hean9g02444 . 41 537 TPS gene family AT4G16730 37.205 1.08e-112 345.0
Hean9g04125 . 45 492 TPS gene family AT3G25820 44.42 4.42e-131 390.0
Hean9g04265 . 14 562 TPS gene family AT4G16740 43.486 1.85e-157 461.0
Hean8g03191 . 4 547 TPS gene family AT5G23960 32.369 2.30e-109 335.0
Hean8g03232 . 7 547 TPS gene family AT5G23960 36.813 4.48e-122 369.0
Hean8g03651 . 7 547 TPS gene family AT5G23960 37.201 8.77e-121 365.0
Hean7g02039 . 17 591 TPS gene family AT3G25820 42.321 2.22e-154 454.0
Hean6g01013 . 3 547 TPS gene family AT5G23960 39.122 3.97e-143 422.0
Hean6g01014 . 7 547 TPS gene family AT5G23960 39.227 2.01e-142 421.0
Hean5g00520 . 47 595 TPS gene family AT3G25810 45.081 4.62e-159 466.0
Hean5g00523 . 47 595 TPS gene family AT3G25810 45.081 3.49e-161 472.0
Hean5g00525 . 41 592 TPS gene family AT3G25820 42.934 1.66e-148 439.0
Hean5g00535 . 29 592 TPS gene family AT3G25820 43.082 1.37e-153 454.0
Hean4g01866 . 4 545 TPS gene family AT5G23960 32.998 4.75e-107 331.0
Hean4g01922 . 63 569 TPS gene family AT3G14520 33.075 1.89e-92 300.0
Hean4g04255 . 110 449 TPS gene family AT5G23960 40.462 9.15e-88 274.0
Hean3g00192 . 44 798 TPS gene family AT4G02780 51.684 0.0 792.0
Hean3g00195 . 27 779 TPS gene family AT1G79460 47.487 0.0 700.0
Hean3g00330 . 645 758 TPS gene family AT1G79460 35.965 1.79e-17 75.1
Hean3g01513 . 20 592 TPS gene family AT3G25820 42.757 7.56e-159 465.0
Hean3g01518 . 17 588 TPS gene family AT2G24210 41.594 7.71e-160 468.0
Hean3g01519 . 1 592 TPS gene family AT3G25820 39.632 7.02e-145 429.0
Hean3g01520 . 79 592 TPS gene family AT3G25820 43.243 2.74e-149 440.0
Hean2g01088 . 4 547 TPS gene family AT5G23960 34.601 2.56e-112 343.0
Hean2g01210 . 358 802 TPS gene family AT4G02780 38.669 2.43e-93 297.0
Hean2g01211 . 261 361 TPS gene family AT4G02780 69.307 2.18e-48 165.0
Hean2g01212 . 108 248 TPS gene family AT4G02780 56.944 4.10e-53 177.0
Hean2g01388 . 4 547 TPS gene family AT5G23960 35.805 8.21e-116 352.0
Hean2g01644 . 4 545 TPS gene family AT5G23960 33.88 6.04e-113 345.0
Hean2g01960 . 21 545 TPS gene family AT5G23960 38.534 1.46e-121 367.0
Hean2g02628 . 84 168 TPS gene family AT4G16730 41.86 2.24e-13 62.0
Hean2g02629 . 222 269 TPS gene family AT4G16740 62.5 2.35e-16 68.9
Hean2g02630 . 315 387 TPS gene family AT4G16740 54.795 5.70e-25 95.1
Hean2g02631 . 4 592 TPS gene family AT3G25820 40.536 2.12e-146 434.0
Hean1g00185 . 40 547 TPS gene family AT5G23960 32.882 3.24e-106 326.0
Hean1g00539 . 7 779 TPS gene family AT1G61120 44.43 0.0 671.0
Hean1g00742 . 4 521 TPS gene family AT5G23960 33.27 1.48e-96 301.0
Hean1g00748 . 1 547 TPS gene family AT5G23960 33.989 3.98e-110 337.0
Hean1g00752 . 385 611 TPS gene family AT1G70080 32.159 3.79e-35 130.0
Hean1g00753 . 176 332 TPS gene family AT3G14490 44.937 1.22e-39 142.0
Hean1g00759 . 4 529 TPS gene family AT5G23960 36.142 1.03e-121 367.0
Hean1g00762 . 335 490 TPS gene family AT5G23960 31.41 4.01e-20 85.9
Hean1g00763 . 171 325 TPS gene family AT3G14490 44.872 7.85e-40 140.0
Hean1g01673 . 423 802 TPS gene family AT4G02780 43.669 2.32e-88 281.0
Hean1g01674 . 92 397 TPS gene family AT4G02780 55.663 6.81e-127 382.0
Hean1g02147 . 634 719 TPS gene family AT1G79460 45.977 2.44e-16 75.5