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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00554 ATGGCTCAATCGGTGTCATCAATGGCAGGGCTACGTGGTTCCTCTCTAGCTGCCTTAGAGGGTAGTCTCCAGCTCAATGGCTCGACCCGTTTGACCACGACTGGAAATGGCCGTGTTGGTGTTGCACGGACTGGGCTAGTTGTTAGAGCCCAACAGGTACATGGAGAAAGTGAGACTAGCCGTAGAGCTATGTTGGGGCTCATTGCCACTGGACTAGCCTCAGGTTCTTTCGTTCAGGCTGTGCTTGCCGATGCTAAGCCTATCAAGCTCGGCCCACCTCCACCACCCTCCGGCGGACTTCCGGGAACACTAAACTCCGATCAGGCTAGGGACCTCGATTTGCCGTTAAAGAACCGGTTCTACCTCCAGCCATTGTCGCCAACGGAGGCTGCAGCTCGTGCAAAAGAATCAGCAAAAGAGATACTAAATGTTAAAGAGTTCATTGACAAAAAGGCATGGCCATATGTCCAGAACGATCTTCGTTTGAGGTCAGAATACCTTCGTTTTGACCTCAATACCGTCATTGCCGCTAAGCCAAAGGACGAGAAGAAACAACTCAAAGATCTCACCGGAAAGCTTTTCCAAGACATGGCAGATCTTGACTATGCGGCAAAGATCAAAAGCTCGGCTGATGCAGAGAAGAGTTACGCTGCAGCTGTATCTAGTCTTAATGATGTTCTTTCGAAACTGGGTTAA 696 50.0 MAQSVSSMAGLRGSSLAALEGSLQLNGSTRLTTTGNGRVGVARTGLVVRAQQVHGESETSRRAMLGLIATGLASGSFVQAVLADAKPIKLGPPPPPSGGLPGTLNSDQARDLDLPLKNRFYLQPLSPTEAAARAKESAKEILNVKEFIDKKAWPYVQNDLRLRSEYLRFDLNTVIAAKPKDEKKQLKDLTGKLFQDMADLDYAAKIKSSADAEKSYAAAVSSLNDVLSKLG 231
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00554 231 PANTHER OXYGEN-EVOLVING ENHANCER PROTEIN 3-1, CHLOROPLASTIC 34 230 IPR054099 GO:0009507(PANTHER)|GO:0009767(PANTHER)|GO:0045156(PANTHER)
Hean1g00554 231 Pfam Oxygen evolving enhancer protein 3 1 231 IPR008797 GO:0005509(InterPro)|GO:0009523(InterPro)|GO:0009654(InterPro)|GO:0015979(InterPro)|GO:0019898(InterPro)
Hean1g00554 231 FunFam Oxygen-evolving enhancer protein 3 84 231 - -
Hean1g00554 231 SUPERFAMILY Oxygen-evolving enhancer protein 3, 120 230 IPR023222 -
Hean1g00554 231 Gene3D - 84 231 IPR023222 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00554 K08901 photosystem II oxygen-evolving enhancer protein 3
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr11:128782972 Hean1g00554 Hean-Chr1:28094122 dispersed