AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00612 ATGAGTTATTCGTCTGATGATGAGAAACCCTTGATTTTTAGAAGGAGTGTAAAACCTGATAAAGCAAAGGGTTCTTCCCAGCCTCCTAAACCGTCTCCTAAACCAAGCAATGATTCAGATTCTGAAGATGATAAACCATTAAGTTCAAAAATTTCAACTGTATCTAAGGGAAACACTAACGCTAATCATGCCAAAAATGGGTCCCACAAGAGTGTATCTGCAGCTCCTAAACCACAAATAAAAGACGAAGACTCTGATGATGAAAAACCATTATCTTCAAAATTTATATCTAAACCAAATGTGGGATCAGCAAACAAAGTTCATCAAAATGGTTCTGCATCAAGAGATAATCAATCGAAGAATATCAGCGTGAATAAGCGACCACTAGGTGAAGAAAAATCTTCAGGTCAATCATCCGTCAAAAAGCCAAAGCTTTCGGATTCTTCAACACCTGTCAACCGCAAGCCGGTGAATTTGAAAGCAGAAACCAAGTCAGACGATGATGATGATCTTCCCATAGCACAAAGAATAAAGAATCAAGCTTCATCAAGTAGTAAACCATCATCTTCAAAACAAAAAGTGATAAAAAAGAACTCCTCATCTTTAAACCAAACCAACAAGAAGTCAAAGAAGGTGGTCAAAGAGTCAAAGTATTCAAAGCCATCAAAAGTCCCACCTGGCTCTGGTGAAGGGCAGAAATGGACTAGTTTGGTTCATAGTGGTGTAATATTCCCACCTGCATACAAGCCTCATGGTGTTAAGATGCTTTACAAAGGGAAGCCTGTTGATTTGACTCCTGAACAAGAGGAGGTTGCAACGATGTTTGCGGTTATGTTAGATACAGATTATATGACTAAACCTAAGTTTAAAGAGAATTTCTGGGAGGATTGGCAAAAGATTCTGGGGAAAAAACACATGATCCAGAATTTGGATGATTGTGATTTTAAACCAATTTATGAGTGGCATCAGAGCGAAAAAGAGAAGAAGAAGCAAATGACTACAGAAGAGAAGAAGGCATTGAAAGAGGAGAAGATGAAGCTAGAGGACAAGTATATGTGGGCAGTTGTTGATGGTGTCAAAGAAAAGGTTGGAAATTTCCGAGTTGAACCACCTGGGCTATTTCGAGGCCGTGGTGAACATCCAAAGATGGGAAAGCTGAAAAAACGTATCTTTCCAAGCGATATTACCATAAACATTGGAAAGGATGCTCCAATCCCAGAATGTCCAATTCCTGGTGACAGCTGGAAAGAAATCCGGCATGATAATACCGTTACATGGTTAGCTTATTGGTTAGATCCTATCAATAACAAGGAGTTCAAATATGTGTTTCTAGCTGCTAGCAGTTCCTTAAAGGGTCAAAGTGACAAGGAAAAATATGAAAAAGCCAGGTTGTTAAAGGGCTACATACAAGGCATTAGAAATGCTTACACTAAAGATTTTGGAAATAAGGATGTGACAAAGAGACAAGTAGCGGTTGCTACGTATCTCATTGATAAACTAGCACTCAGGGCAGGAAATGAGAAGGATGATGATGAAGCCGATACAGTTGGTTGCTGTACTTTGAAGGTGGAAAATGTCGAGCCAAGTCCTCCAAATATCTTAAAGTTTGACTTTCTTGGTAAAGATTCTATAAGATACCAAAACGAGGTTGAAGTAGAGCTTCCCGTCTTCAAAGCCATTCAACAGTTCCGAACAGGGAAAGCGGGGGGTGATGATCTTTTTGATAAGCTGGATACAAGTAAATTGAATGCTCATCTAAAGGAACTTATGCCTGGCCTTACAGCAAAAGTTTTCCGTACATATAATGCATCCATCACATTAGATGATATGCTAAGTAGGGAAACAAAGGGTAGAGAAGTCGCTGAAAATTTAGTCGTTTACCAACATGCAAACAAGGAGGTCGCTATCATATGTAACCATCAACGTACTGTTTCAAAGTCTCATAGTGCACAAATGACAAGATTAAATGACAAGATAGATGAGTTAAAGGATGTTATAAAAGAACTGGAAACTGATTTGGCTCGCGCAAAGAAAGGGAAGCCGCCGTTGAAAACCTCCGATGGAAAAACAAAGAGAAACTTGAACCCCGAAGCGCTAGAGAAAAAAATAGCTCAGACTAAAGCAAAAATTGAGAAAATGGAACGCGATAAAGAGACCAAGGAAGATTTAAAAACGGTAGCATTGGGCACTTCGAGAATCAACTACCTCGACCCTAGGATAACCGTTGCGTGGTGCAAGAGACATGAAGTTCCCATTGAGAAGATTTTTAACAAGTCTCTATTGGCAAAGTTTGCTTGGTCAATGGATGTGGATCCTAGTTTCAGATTCTGA 2331 39.38 MSYSSDDEKPLIFRRSVKPDKAKGSSQPPKPSPKPSNDSDSEDDKPLSSKISTVSKGNTNANHAKNGSHKSVSAAPKPQIKDEDSDDEKPLSSKFISKPNVGSANKVHQNGSASRDNQSKNISVNKRPLGEEKSSGQSSVKKPKLSDSSTPVNRKPVNLKAETKSDDDDDLPIAQRIKNQASSSSKPSSSKQKVIKKNSSSLNQTNKKSKKVVKESKYSKPSKVPPGSGEGQKWTSLVHSGVIFPPAYKPHGVKMLYKGKPVDLTPEQEEVATMFAVMLDTDYMTKPKFKENFWEDWQKILGKKHMIQNLDDCDFKPIYEWHQSEKEKKKQMTTEEKKALKEEKMKLEDKYMWAVVDGVKEKVGNFRVEPPGLFRGRGEHPKMGKLKKRIFPSDITINIGKDAPIPECPIPGDSWKEIRHDNTVTWLAYWLDPINNKEFKYVFLAASSSLKGQSDKEKYEKARLLKGYIQGIRNAYTKDFGNKDVTKRQVAVATYLIDKLALRAGNEKDDDEADTVGCCTLKVENVEPSPPNILKFDFLGKDSIRYQNEVEVELPVFKAIQQFRTGKAGGDDLFDKLDTSKLNAHLKELMPGLTAKVFRTYNASITLDDMLSRETKGREVAENLVVYQHANKEVAIICNHQRTVSKSHSAQMTRLNDKIDELKDVIKELETDLARAKKGKPPLKTSDGKTKRNLNPEALEKKIAQTKAKIEKMERDKETKEDLKTVALGTSRINYLDPRITVAWCKRHEVPIEKIFNKSLLAKFAWSMDVDPSFRF 776
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00612 776 SUPERFAMILY DNA breaking-rejoining enzymes 447 772 IPR011010 GO:0003677(InterPro)
Hean1g00612 776 SUPERFAMILY PspA lactotransferrin-binding region 654 717 - -
Hean1g00612 776 CDD Topoisomer-IB-N 233 445 - -
Hean1g00612 776 Coils Coil 323 350 - -
Hean1g00612 776 MobiDBLite consensus disorder prediction 76 93 - -
Hean1g00612 776 Gene3D DNA Topoisomerase I, domain 2 229 444 IPR013030 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 MobiDBLite consensus disorder prediction 159 174 - -
Hean1g00612 776 CDD Topo-IB-C 453 646 IPR013500 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 FunFam DNA topoisomerase I 292 444 - -
Hean1g00612 776 MobiDBLite consensus disorder prediction 96 156 - -
Hean1g00612 776 Pfam C-terminal topoisomerase domain 707 776 IPR025834 -
Hean1g00612 776 Coils Coil 645 679 - -
Hean1g00612 776 FunFam DNA topoisomerase I 248 332 - -
Hean1g00612 776 SMART topeu 373 749 IPR013499 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 PANTHER DNA TOPOISOMERASE I 30 776 IPR051062 GO:0003917(PANTHER)|GO:0005730(PANTHER)|GO:0006260(PANTHER)|GO:0006265(PANTHER)|GO:0007059(PANTHER)
Hean1g00612 776 MobiDBLite consensus disorder prediction 1 232 - -
Hean1g00612 776 MobiDBLite consensus disorder prediction 1 21 - -
Hean1g00612 776 MobiDBLite consensus disorder prediction 50 73 - -
Hean1g00612 776 Pfam Eukaryotic DNA topoisomerase I, DNA binding fragment 232 444 IPR008336 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 MobiDBLite consensus disorder prediction 176 207 - -
Hean1g00612 776 Gene3D - 596 776 IPR014727 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 PRINTS Eukaryotic DNA topoisomerase I signature 729 740 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 PRINTS Eukaryotic DNA topoisomerase I signature 512 526 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 PRINTS Eukaryotic DNA topoisomerase I signature 592 606 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 PRINTS Eukaryotic DNA topoisomerase I signature 534 550 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 PRINTS Eukaryotic DNA topoisomerase I signature 373 382 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 PRINTS Eukaryotic DNA topoisomerase I signature 489 508 IPR001631 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 Gene3D - 249 332 IPR013034 GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 FunFam DNA topoisomerase I 596 776 - -
Hean1g00612 776 Gene3D Topoisomerase I; Chain A, domain 3 447 595 IPR014711 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 Pfam Eukaryotic DNA topoisomerase I, catalytic core 447 672 IPR013500 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 FunFam DNA topoisomerase I 447 595 - -
Hean1g00612 776 SUPERFAMILY Eukaryotic DNA topoisomerase I, N-terminal DNA-binding fragment 231 446 IPR036202 GO:0003677(InterPro)|GO:0003917(InterPro)|GO:0005694(InterPro)|GO:0006265(InterPro)
Hean1g00612 776 Coils Coil 696 723 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00612 K03163 DNA topoisomerase I [EC:5.6.2.1]
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Event-related genes

Select Gene_1 Gene_2 Event_name
102786 Hean16g02623 Hean1g00612
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:31558434 Hean16g02623 Hean-Chr16:133650732 wgd