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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00626 ATGGGACATTATCACAAAACAATTGCAATTTTCCTCATTTGTTCATCATTTTTGTATCCTCCCTTGATCCTTTCTGATTCAACTAAAGGATACATCAGAATCAAACTAAAAAAACTGGAACCGAATCACGAGAGCCATGTTATGTCACGCTCCGTGCCGAGTTATTCCTTGAAGGTGCGTGATGAAAATAATCCTAACGGGTCAGATATCGTGTTGTTAAAGAACTACATGGACACTCAGTATTATGGTGAGATTGGCATTGGCACCCCACCTCAAAAGTTCACTGTAGTTTATGACACTGGTAGCTCTAATCTATGGGTGCCGTCCTCAGAATGTTTCTTCTCGGTTAGTTTATACACGCGTATTGAGCTGTCACCTTAA 381 40.42 MGHYHKTIAIFLICSSFLYPPLILSDSTKGYIRIKLKKLEPNHESHVMSRSVPSYSLKVRDENNPNGSDIVLLKNYMDTQYYGEIGIGTPPQKFTVVYDTGSSNLWVPSSECFFSVSLYTRIELSP 126
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00626 126 Pfam Eukaryotic aspartyl protease 80 115 IPR033121 -
Hean1g00626 126 Gene3D Acid Proteases 32 123 IPR021109 -
Hean1g00626 126 ProSiteProfiles Peptidase family A1 domain profile. 81 126 IPR033121 -
Hean1g00626 126 PANTHER BETA-SITE APP-CLEAVING ENZYME, ISOFORM A-RELATED 25 115 IPR001461 GO:0004190(PANTHER)|GO:0004190(InterPro)|GO:0006508(InterPro)|GO:0006508(PANTHER)
Hean1g00626 126 SUPERFAMILY Acid proteases 17 115 IPR021109 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00626 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr1:32176252 Hean6g02438 Hean-Chr6:77359177 dispersed
Hean Hean-Chr1:32176252 Hean4g04408 Hean-Chr4:205185244 transposed