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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean1g00637 ATGGCAGCATCCGCCATGGACGGCGTTGCTGCGACGGCGCTCCGGTCAGTTCTTCAACGCGTGAAACAAGCAGCCGAAAGATCATCTCGTGCATCCGATCGGATAAGAGTAGTCGCAGTGAGCAAAACAAAGCCCGTTTCACTCCTCCGAGAAGTATACGACACCGGTCACCGGTGTTTCGGTGAAAATTACGTTCAGGAAATCGTTGAAAAAGCACCTCAGCTTCCTGAAGATATAGAGTGGCATTTTATTGGAAATTTGCAGAGTAACAAAGTGAAGCCTCTGTTGACTGGGGTACCGAATCTTGCCATGGTGGAGACTGTAGATGATGAAAAGATTGCAAATAATCTTGATCGAGTTATTGGGAACATTGGCAGGAAGCCTTTGAAGGTGTTGGTCCAGGTGAATACAAGTGGAGAAACATCAAAATTCGGAGTTGACCCCGATGGGTGCTTGGCGCTTGTGAAACATGTTACTTCAAACTGCCCGAACCTTGAGTTTTGTGGCTTAATGACCATTGGGATGCCAGATTATACTTCAACTCCAGAGAACTTCAAGACATTAGCCAATTGCAGAACGGAGGTATGCAATGCTCTTGAAATACCTGAGGAGCAATGCGAACTGTCAATGGGCATGTCTGGTGACTTTGAGCTAGCTATTGAAATGGGCAGTACCAATGTGAGAGTCGGATCTACCATTTTTGGAGCAAGGGAGTACCCAAAAAAACAATGA 732 46.31 MAASAMDGVAATALRSVLQRVKQAAERSSRASDRIRVVAVSKTKPVSLLREVYDTGHRCFGENYVQEIVEKAPQLPEDIEWHFIGNLQSNKVKPLLTGVPNLAMVETVDDEKIANNLDRVIGNIGRKPLKVLVQVNTSGETSKFGVDPDGCLALVKHVTSNCPNLEFCGLMTIGMPDYTSTPENFKTLANCRTEVCNALEIPEEQCELSMGMSGDFELAIEMGSTNVRVGSTIFGAREYPKKQ 243
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean1g00637 243 Gene3D Alanine racemase 2 243 IPR029066 -
Hean1g00637 243 FunFam Pyridoxal phosphate homeostasis protein 2 243 - -
Hean1g00637 243 Pfam Alanine racemase, N-terminal domain 26 237 IPR001608 -
Hean1g00637 243 NCBIfam YggS family pyridoxal phosphate-dependent enzyme 14 237 IPR011078 GO:0030170(InterPro)
Hean1g00637 243 CDD PLPDE-III-YBL036c-euk 14 235 - -
Hean1g00637 243 PANTHER PROLINE SYNTHETASE CO-TRANSCRIBED BACTERIAL HOMOLOG PROTEIN 7 240 IPR011078 GO:0005622(PANTHER)|GO:0030170(PANTHER)|GO:0030170(InterPro)
Hean1g00637 243 Hamap Pyridoxal phosphate homeostasis protein. 12 236 IPR011078 GO:0030170(InterPro)
Hean1g00637 243 PIRSF YBL036c-PLPDEIII 1 243 IPR011078 GO:0030170(InterPro)
Hean1g00637 243 ProSitePatterns Uncharacterized protein family UPF0001 signature. 81 95 IPR011078 GO:0030170(InterPro)
Hean1g00637 243 SUPERFAMILY PLP-binding barrel 12 235 IPR029066 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean1g00637 K06997 PLP dependent protein
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr10:154226491 Hean1g00637 Hean-Chr1:32652430 dispersed
Hean Hean-Chr16:176185258 Hean1g00637 Hean-Chr1:32652430 dispersed
Hean Hean-Chr1:32652430 Hean4g00446 Hean-Chr4:12130152 dispersed