AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hean4g04344 | ATGATCATCATCCATCCGTCCATATTTGTCCACCCCACTCCCAAATCTAACGCCTCTGAATCTCCCACGTCAGCTTCTCCTTATCACAAAACAGAAAGCTCTCATTCTTCCACGTGGCACTCACGATGCGTTATTACTAATCAATCCAACGACCCTCATCCTCTCACTCCAACCCCCCAAACCCTCTCCGGCGACTCATCTCCGCCGTTAATCCTTCAAAACGAGTTCATAAGTTTGAGATCAGCGATGGCGGATTCGGACAACGAGTCCGGCGGACAGAACGAGTTATCTGCTCGAGAACAGGACAGGTTCCTGCCGATAGCTAACGTGAGCCGGATAATGAAAAAGGCGTTACCGGCGAACGCGAAGATATCGAAGGAGGCGAAGGAGACGGTGCAGGAGTGCGTATCGGAGTTCATAAGCTTCATCACCGGAGAAGCATCGGACAAGTGTCAGAGAGAGAAGCGGAAGACGATCAACGGTGACGATCTGCTGTGGGCGATGACGACGTTAGGGTTTGAAGAGTATGTGGAGCCGTTGAAGGTTTATCTGGGGAAGTATAGAGAAATGGAAGGGGAGAGGACAACCACGGTGGGGGGGAGGCAAGGGGAAACTGCTGCTGGTGGTGATTCCGGTGGTGGATATAACGACGGTGGTGGTGGTGGTTATGGAGGGTTGCAGAGTGGTGGGATGGGTCGGGTCGGGTATAACCAGATGTATAATTCGGGTTCGGTTTATCACTTGGGGTTAGGGAGTCCCAAGGGTGGAGGTGGTTCTGCCACTAGATAG | 789 | 52.34 | MIIIHPSIFVHPTPKSNASESPTSASPYHKTESSHSSTWHSRCVITNQSNDPHPLTPTPQTLSGDSSPPLILQNEFISLRSAMADSDNESGGQNELSAREQDRFLPIANVSRIMKKALPANAKISKEAKETVQECVSEFISFITGEASDKCQREKRKTINGDDLLWAMTTLGFEEYVEPLKVYLGKYREMEGERTTTVGGRQGETAAGGDSGGGYNDGGGGGYGGLQSGGMGRVGYNQMYNSGSVYHLGLGSPKGGGGSATR | 262 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hean4g04344 | 262 | Gene3D | Histone, subunit A | 92 | 210 | IPR009072 | GO:0046982(InterPro) | |
| Hean4g04344 | 262 | MobiDBLite | consensus disorder prediction | 12 | 67 | - | - | |
| Hean4g04344 | 262 | SUPERFAMILY | Histone-fold | 101 | 203 | IPR009072 | GO:0046982(InterPro) | |
| Hean4g04344 | 262 | PRINTS | CCAAT-binding transcription factor subunit A signature | 151 | 169 | - | - | |
| Hean4g04344 | 262 | PRINTS | CCAAT-binding transcription factor subunit A signature | 132 | 150 | - | - | |
| Hean4g04344 | 262 | PRINTS | CCAAT-binding transcription factor subunit A signature | 170 | 188 | - | - | |
| Hean4g04344 | 262 | PANTHER | CCAAT-BINDING TRANSCRIPTION FACTOR-RELATED | 88 | 204 | IPR027113 | GO:0000978(PANTHER)|GO:0000981(PANTHER)|GO:0001228(InterPro)|GO:0006355(InterPro)|GO:0006357(PANTHER)|GO:0016602(InterPro)|GO:0016602(PANTHER) | |
| Hean4g04344 | 262 | FunFam | Nuclear transcription factor Y subunit B-3 | 93 | 213 | - | - | |
| Hean4g04344 | 262 | MobiDBLite | consensus disorder prediction | 194 | 216 | - | - | |
| Hean4g04344 | 262 | ProSitePatterns | NF-YB-HAP3 subunit signature. | 135 | 151 | IPR003956 | GO:0005634(InterPro)|GO:0006355(InterPro)|GO:0043565(InterPro) | |
| Hean4g04344 | 262 | MobiDBLite | consensus disorder prediction | 1 | 67 | - | - | |
| Hean4g04344 | 262 | Pfam | Histone-like transcription factor (CBF-NF-Y) and archaeal histone | 104 | 168 | IPR003958 | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hean4g04344 | K08065 | nuclear transcription Y subunit beta |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 402140 | Hean11g00672 | Hean4g04344 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hean | Hean-Chr16:166812729 | Hean4g04344 | Hean-Chr4:204174547 | dispersed | |
| Hean | Hean-Chr4:204174547 | Hean7g02023 | Hean-Chr7:121026035 | dispersed | |
| Hean | Hean-Chr4:204174547 | Hean4g04346 | Hean-Chr4:204184604 | proximal | |
| Hean | Hean-Chr14:128082894 | Hean4g04344 | Hean-Chr4:204174547 | transposed | |
| Hean | Hean-Chr15:4182056 | Hean4g04344 | Hean-Chr4:204174547 | transposed | |
| Hean | Hean-Chr16:131304728 | Hean4g04344 | Hean-Chr4:204174547 | transposed | |
| Hean | Hean-Chr4:183467340 | Hean4g04344 | Hean-Chr4:204174547 | transposed | |
| Hean | Hean-Chr7:40444384 | Hean4g04344 | Hean-Chr4:204174547 | transposed | |
| Hean | Hean-Chr8:104976040 | Hean4g04344 | Hean-Chr4:204174547 | transposed | |
| Hean | Hean-Chr11:13653070 | Hean4g04344 | Hean-Chr4:204174547 | wgd |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Hean16g02270 | . | 48 | 145 | CCAAT-HAP3 Transcription Factor family | AT2G47810 | 73.469 | 4.60e-51 | 157.0 | |
| Hean16g02583 | . | 1 | 201 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 60.194 | 8.93e-73 | 219.0 | |
| Hean16g03393 | . | 1 | 126 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 87.402 | 8.88e-77 | 225.0 | |
| Hean15g00277 | . | 13 | 151 | CCAAT-HAP3 Transcription Factor family | AT2G47810 | 62.59 | 1.10e-59 | 181.0 | |
| Hean14g01033 | . | 35 | 215 | CCAAT-HAP3 Transcription Factor family | AT2G13570 | 58.791 | 7.59e-63 | 192.0 | |
| Hean14g01649 | . | 32 | 121 | CCAAT-HAP3 Transcription Factor family | AT5G47640 | 30.208 | 3.66e-11 | 57.0 | |
| Hean14g02401 | . | 6 | 108 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 75.728 | 6.60e-53 | 164.0 | |
| Hean14g02566 | . | 13 | 120 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 82.407 | 3.40e-63 | 188.0 | |
| Hean14g03744 | . | 13 | 165 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 71.895 | 4.86e-73 | 214.0 | |
| Hean11g00672 | WGDA | 1 | 126 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 87.402 | 8.88e-77 | 225.0 | |
| Hean11g01218 | . | 35 | 110 | CCAAT-HAP3 Transcription Factor family | AT2G38880 | 52.632 | 2.45e-25 | 91.7 | |
| Hean11g01220 | ACH | 1 | 125 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 78.4 | 3.43e-68 | 202.0 | |
| Hean10g00623 | . | 43 | 149 | CCAAT-HAP3 Transcription Factor family | AT2G47810 | 75.701 | 2.99e-58 | 178.0 | |
| Hean10g01848 | . | 1 | 110 | CCAAT-HAP3 Transcription Factor family | AT1G09030 | 61.818 | 1.48e-48 | 150.0 | |
| Hean9g01561 | . | 19 | 158 | CCAAT-HAP3 Transcription Factor family | AT3G53340 | 76.596 | 5.92e-79 | 230.0 | |
| Hean9g02003 | . | 90 | 121 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 87.5 | 1.14e-13 | 59.7 | |
| Hean9g03539 | . | 89 | 119 | CCAAT-HAP3 Transcription Factor family | AT3G53340 | 70.968 | 8.92e-12 | 54.7 | |
| Hean8g02855 | ACH | 1 | 123 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 88.71 | 4.79e-76 | 223.0 | |
| Hean7g00590 | . | 1 | 62 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 62.903 | 2.42e-19 | 74.3 | |
| Hean7g00656 | . | 51 | 157 | CCAAT-HAP3 Transcription Factor family | AT2G47810 | 72.072 | 1.79e-56 | 171.0 | |
| Hean7g02023 | ACH | 1 | 173 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 76.667 | 2.20e-90 | 262.0 | |
| Hean4g03533 | . | 50 | 153 | CCAAT-HAP3 Transcription Factor family | AT5G47670 | 82.857 | 1.33e-60 | 186.0 | |
| Hean4g04344 | WGDA | 1 | 124 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 86.4 | 1.28e-73 | 220.0 | |
| Hean4g04346 | WGDA | 1 | 124 | CCAAT-HAP3 Transcription Factor family | AT4G14540 | 87.2 | 7.09e-76 | 222.0 | |
| Hean3g01193 | . | 48 | 155 | CCAAT-HAP3 Transcription Factor family | AT2G47810 | 65.455 | 1.04e-49 | 154.0 | |
| Hean1g03345 | ACH | 1 | 173 | CCAAT-HAP3 Transcription Factor family | AT2G37060 | 74.86 | 2.23e-88 | 254.0 |
| Select | Gene | Hmm_acc | Hmm_name | Score | E-value | Regulatory Factors | Family |
|---|---|---|---|---|---|---|---|
| Hean | CBFD_NFYB_HMF | 5.7e-27 | CL0012 | TF | NF-YB |