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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04350 ATGGCTGCACAGATCAGTCCTTGTTCTTCCTCTCCCTTTCCTTCTACAAAATTCTCCAGAAAATCATGGCTTTTCAAGATTCATTCGAAAATCAATCCGAATAACCAGTTTGAACTCAAATCCTCACATGGGTATCCTCCTCTGAATTCGGTTTCTTTGCAGGATCATGTCGTATCGAACAACGCTACGAATCAATCGCATCTGCCTTCTTTCAACTCACTCAGACGACTGTTCTTAATTTCCTGTTATCATTTTCTAGTAGCTTTTCGAGTAGATGCAGCAGCAGAGATAAACAAGCCTTTAGCTAAAGAAAATGTATTAACCGAACAAACCGAACCCAATTTAAGTGTAACCATTGTTGGTGCTTCAGGCGATCTCGCCAAAAAGAAAATATTTCCGGCCCTGTTTGCTTTGTTTTATGAAGATTGTTTACCGCAGAATTTTATTATATTTGGTTATGCTCGAACCGAAATGACTGATGAGGAACTGAGGGAGACCATTAGTGGAACATTAACTTGTCGAATTGATAAGAGAGAGAACTGTGGTAATAAAATGAAAGCGTTTCTTGCAAGATGCTTTTACCACACGGGTCAATACAACTCCGAGGAAAATTTTGCAGAATTGGATAATAGGCTAAAACAGAAAGAGGATGGAAAGACGTCGAATAGGCTGTTTTATTTGTCAATACCTCCGGACATTTTTGCGGATGTGGTACGCTGCGCCAGTGGCAAAGCGTTCTCAAAAACCGGGTGGACAAGGGTAATTGTGGAAAAACCGTTTGGGCGTGACTCAGAATCTTCTGCTGAGTTAACAAGAAGCTTGAAGAAGTACTTAGTTGAGGATCAAATCTTTAGGATTGATCATTATTTGGGCAAGGAGCTAGTAGAGAATTTATCAGTTCTTCGTTTCTCGAATGTTGTTTTCGAACCACTTTGGTCAAGAAATTACATTCGAAACGTACAATTTATATTTTCCGAAGATTTTGGAACAGAAGGGAGAGGAGGGTGA 1008 39.88 MAAQISPCSSSPFPSTKFSRKSWLFKIHSKINPNNQFELKSSHGYPPLNSVSLQDHVVSNNATNQSHLPSFNSLRRLFLISCYHFLVAFRVDAAAEINKPLAKENVLTEQTEPNLSVTIVGASGDLAKKKIFPALFALFYEDCLPQNFIIFGYARTEMTDEELRETISGTLTCRIDKRENCGNKMKAFLARCFYHTGQYNSEENFAELDNRLKQKEDGKTSNRLFYLSIPPDIFADVVRCASGKAFSKTGWTRVIVEKPFGRDSESSAELTRSLKKYLVEDQIFRIDHYLGKELVENLSVLRFSNVVFEPLWSRNYIRNVQFIFSEDFGTEGRGG 335
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04350 335 FunFam Glucose-6-phosphate 1-dehydrogenase 111 285 - -
Hean4g04350 335 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 109 300 IPR036291 -
Hean4g04350 335 Gene3D - 111 285 - -
Hean4g04350 335 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 300 335 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Hean4g04350 335 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 110 335 IPR001282 GO:0004345(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Hean4g04350 335 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 287 335 - -
Hean4g04350 335 ProSitePatterns Glucose-6-phosphate dehydrogenase active site. 287 293 IPR019796 GO:0004345(InterPro)|GO:0006006(InterPro)
Hean4g04350 335 Pfam Glucose-6-phosphate dehydrogenase, NAD binding domain 119 297 IPR022674 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Hean4g04350 335 Gene3D Dihydrodipicolinate Reductase; domain 2 287 335 - -
Hean4g04350 335 PRINTS Glucose-6-phosphate dehydrogenase signature 253 266 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Hean4g04350 335 PRINTS Glucose-6-phosphate dehydrogenase signature 329 335 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Hean4g04350 335 PRINTS Glucose-6-phosphate dehydrogenase signature 277 305 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04350 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr4:204209183 Hean4g04353 Hean-Chr4:204226011 dispersed
Hean Hean-Chr4:204209183 Hean4g04352 Hean-Chr4:204219538 proximal