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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04351 ATGCAAAATCACCTATTGCAAATATTAGCATTGTTTGCGATGGAAACACCCGTGAGTTTGGATGCCGAGGACATTAGAAATGAGAAGGTCAAAGTTTTGAGGTCAATGAGACCTTTACGACTCGAAGATGTAGTCATTGGTCAATACAAGGGTGGTCAAAGCAAAGGCGGAAAGTCGTATTTAGGATACACGGAGGACCCCACCGTCCCAAACAATAGCTTAACTCCAACTTTTGCGGCCGCAGCTCTCTTCATCGATAATGCTCGGTGGGATGGCGTTCCTTTTCTTATGAAAGCCGGGAAGGCCCTCAATACTAGACGGGCGGAAATCAGAGTTCAATTTAGACATGTTCCAGGTAACCTATACAAGAAATACTTCGGTCTGGATATGGATAAGGCTACAAACGAGCTCGTGCTTCGTGTACAGCCCGATGAAGCCATTTATCTCAAGATTAATAGTAAGATTCCTGGTCTTGGAATGAAGCTTGACCAAAGTGACCTGAATTTATTCTATCGTATGAGGTACCTAAAGGAAATTCCGGATGCATACGAGAGACTTTTGTTGGACGCGATACAAGGTGAAAGAAGATTGTTCATAAGAAGTGATGAACTTGATGCAGCTTGGTCTATATTCACACCACTATTAAAAGAACTCGAAACTAAGAAGATTGCACCGGAGTTGTATCCGTATGGTAGTAGAGGGCCGGTCGGAGCTTATTATCTAGCAGCCAAGTATAACGTTCGGTGGGGAGATATCGCGGGAGATGAATGA 771 43.84 MQNHLLQILALFAMETPVSLDAEDIRNEKVKVLRSMRPLRLEDVVIGQYKGGQSKGGKSYLGYTEDPTVPNNSLTPTFAAAALFIDNARWDGVPFLMKAGKALNTRRAEIRVQFRHVPGNLYKKYFGLDMDKATNELVLRVQPDEAIYLKINSKIPGLGMKLDQSDLNLFYRMRYLKEIPDAYERLLLDAIQGERRLFIRSDELDAAWSIFTPLLKELETKKIAPELYPYGSRGPVGAYYLAAKYNVRWGDIAGDE 256
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04351 256 PRINTS Glucose-6-phosphate dehydrogenase signature 1 17 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Hean4g04351 256 PRINTS Glucose-6-phosphate dehydrogenase signature 89 115 IPR001282 GO:0006006(InterPro)|GO:0016614(InterPro)|GO:0050661(InterPro)
Hean4g04351 256 Gene3D Dihydrodipicolinate Reductase; domain 2 1 250 - -
Hean4g04351 256 Pfam Glucose-6-phosphate dehydrogenase, C-terminal domain 1 249 IPR022675 GO:0004345(InterPro)|GO:0006006(InterPro)|GO:0050661(InterPro)
Hean4g04351 256 SUPERFAMILY Glyceraldehyde-3-phosphate dehydrogenase-like, C-terminal domain 1 249 - -
Hean4g04351 256 PANTHER GLUCOSE-6-PHOSPHATE 1-DEHYDROGENASE G6PD 1 248 IPR001282 GO:0004345(PANTHER)|GO:0006006(InterPro)|GO:0006006(PANTHER)|GO:0009051(PANTHER)|GO:0009570(PANTHER)|GO:0016614(InterPro)|GO:0050661(InterPro)
Hean4g04351 256 FunFam Glucose-6-phosphate 1-dehydrogenase 1 250 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04351 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:32007404 Hean4g04351 Hean-Chr4:204213713 dispersed
Hean Hean-Chr2:156735995 Hean4g04351 Hean-Chr4:204213713 dispersed
Hean Hean-Chr4:204213713 Hean4g04353 Hean-Chr4:204226011 proximal
Hean Hean-Chr4:204213713 Hean4g04354 Hean-Chr4:204229364 proximal