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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04389 ATGGAAGACGCACCTGCAACAAACCCTAACGACGCCATCATCGCACAGTTCTCCAACATCACATCTGCTTCCACACAAGAAGCCACCTTCTACCTCGAATCACACAACTACGATCTCGATTCCGCCCTCTCCACCTTCTTCGAAGCCACCGCCGCAGACGACGCCGACGCCGGAGAACACGCTCTTCCGGAGAACACTCGTTCTCCGGTGTCTTCATCACCGTCTCGTTCGCGATCAATCTCTCCGCCTCCGTCGCTAGGGTTACAGCAATTGGACGGTGCAAATCCGTACAATTTGCGGTCGAGGAATACTGGTGCGGAGAAGAAGGCGTCTGGTAGTAGGTCTAGTGGACGGATTCGGACTTTTTCGGATCTGAATCGGACTGGTGGTGACTCCGGGAGTGATTCCGATGAGCCTCAGGAGTATTATACTGGTGGTGAGAAGAGTGGCATGCTTGTTCAAGATCCAAGAAAGATGAATGATGTGGAATCTCTGTTTAATCAAGCAAGACAAGCAGGAGCTGAAGAACGACCTCTTGATCAATTTCAACCGTCTTCAAGCTCTAGAAGCTTCGCTGGAAGAGGAAGACTTTTATCTGGAGAGACGACATCAGCTCCACCTCAGCAACCGGAACCTCTCACACACACTATCACTTTCTGGACCAATGGTTTCACTGTAAATGATGGCCCTTTGAGGAGGCTTGATGATCCCCAAAATGCATCATTCTTGGAGAGCATAAGGAAATCCGAGTGTCCAGAAGAACTTAAGTCTGCAACAGGAAGAGCTCCCGATCATGTTAGTCTTGTAAGAAAGTTGGAGGAGTATCCTGTCCAGAAACACCGCCAGGCCGCCTTTGTGGGGGTCGGTAGAACACTTGGCTCCACCACTTCAGAAGACGCCACTGCCGCCATCCCGGCACCTGCAACCGCAGCCCCAACCCCATTTGTTGGGCTAGTTGTTGATAACGCATTACCGTCAACCTCTATTCAACTTAGACTGGCTGACGGGACTCGTATGGTTTCACGTTTCAATTTCCATCACACGATAAGCAACATTCGCTCTTTCATTGATGCATCAAGGCCCGGTGGCCCTCGGGCTTATCAGTTATTGACGATGGGGTTCCCGCCAAAACAGCTTAATGATTTGAACCAGACAATTGAAGAAGCCGGGTTAGCCAATTCGGTTGTGATCCAAAAGCTCTAA 1203 50.37 MEDAPATNPNDAIIAQFSNITSASTQEATFYLESHNYDLDSALSTFFEATAADDADAGEHALPENTRSPVSSSPSRSRSISPPPSLGLQQLDGANPYNLRSRNTGAEKKASGSRSSGRIRTFSDLNRTGGDSGSDSDEPQEYYTGGEKSGMLVQDPRKMNDVESLFNQARQAGAEERPLDQFQPSSSSRSFAGRGRLLSGETTSAPPQQPEPLTHTITFWTNGFTVNDGPLRRLDDPQNASFLESIRKSECPEELKSATGRAPDHVSLVRKLEEYPVQKHRQAAFVGVGRTLGSTTSEDATAAIPAPATAAPTPFVGLVVDNALPSTSIQLRLADGTRMVSRFNFHHTISNIRSFIDASRPGGPRAYQLLTMGFPPKQLNDLNQTIEEAGLANSVVIQKL 400
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04389 400 MobiDBLite consensus disorder prediction 172 213 - -
Hean4g04389 400 Pfam UBA-like domain 11 49 - -
Hean4g04389 400 MobiDBLite consensus disorder prediction 65 139 - -
Hean4g04389 400 SUPERFAMILY Ubiquitin-like 285 398 IPR029071 -
Hean4g04389 400 Pfam UBX domain 325 399 IPR001012 GO:0005515(InterPro)
Hean4g04389 400 Gene3D SEP domain 212 274 IPR036241 -
Hean4g04389 400 MobiDBLite consensus disorder prediction 59 152 - -
Hean4g04389 400 CDD UBA-p47 11 48 - -
Hean4g04389 400 Gene3D - 8 49 - -
Hean4g04389 400 CDD UBX-UBXN2 328 399 - -
Hean4g04389 400 SMART faf-3 209 302 IPR012989 -
Hean4g04389 400 SUPERFAMILY NSFL1 (p97 ATPase) cofactor p47, SEP domain 206 298 IPR036241 -
Hean4g04389 400 FunFam UBX domain-containing protein 1 212 274 - -
Hean4g04389 400 SUPERFAMILY UBA-like 9 48 IPR009060 GO:0005515(InterPro)
Hean4g04389 400 FunFam Plant UBX domain-containing protein 4 277 400 - -
Hean4g04389 400 Gene3D - 277 400 - -
Hean4g04389 400 PANTHER UBX DOMAIN CONTAINING PROTEIN 12 399 - GO:0000045(PANTHER)|GO:0005634(PANTHER)|GO:0005829(PANTHER)|GO:0007030(PANTHER)|GO:0031468(PANTHER)|GO:0043130(PANTHER)|GO:0043161(PANTHER)|GO:0061025(PANTHER)
Hean4g04389 400 ProSiteProfiles SEP domain profile. 212 277 IPR012989 -
Hean4g04389 400 SMART ubx-3 321 400 IPR001012 GO:0005515(InterPro)
Hean4g04389 400 ProSiteProfiles UBX domain profile. 322 399 IPR001012 GO:0005515(InterPro)
Hean4g04389 400 Pfam SEP domain 217 290 IPR012989 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04389 K14012 UBX domain-containing protein 1
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr15:13522818 Hean4g04389 Hean-Chr4:204836427 dispersed