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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04390 ATGATGTGGAACTTTTTTCATAGTTATATATTTTTATCTTACACTAAAAATCTATTTATTGCGAGACTTAACGATGTTGTTGGTTTGTTTGTATGTACAGTCGGTGATTATGTGCGTATAAGGTCTCATGACCCTAAAACATCCGTTTATGTTGCTCGAGTACAGTCGTTGGATGTTGAGCATCAAATGGTTCGGATTCAGAGGTATTATTTTCCAGAGGAGACAAAGCAGGGGAGGAAAAGGTTTCATGGTACAAAGGAGGTGATTTCGTCTAATCACTATGATGTACAGAGCATTCATGCCATCCAAGGGAAGTGTGTTGTTCGTTCCTTAGAGAACTACATGACCCTAAAGTGTGTCGGCGTTGACGATTATTTTTGTCGATTTGAGTACGATTGTGTTGAAAAATGTATCGTCAATGATTCTGTTGCCGTGTATTGTGATTGTCAAATGCCCTGCAATCCAGATCTCTTTATGGTGCAATGCAATGGATGCGAATGCTGGTATATCTTGTCCAAATATCATCAATAA 531 38.42 MMWNFFHSYIFLSYTKNLFIARLNDVVGLFVCTVGDYVRIRSHDPKTSVYVARVQSLDVEHQMVRIQRYYFPEETKQGRKRFHGTKEVISSNHYDVQSIHAIQGKCVVRSLENYMTLKCVGVDDYFCRFEYDCVEKCIVNDSVAVYCDCQMPCNPDLFMVQCNGCECWYILSKYHQ 176
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04390 176 Gene3D - 26 170 IPR043151 -
Hean4g04390 176 ProSiteProfiles BAH domain profile. 30 142 IPR001025 GO:0003682(InterPro)
Hean4g04390 176 SMART BAH-4 33 142 IPR001025 GO:0003682(InterPro)
Hean4g04390 176 Pfam BAH domain 33 135 IPR001025 GO:0003682(InterPro)
Hean4g04390 176 PANTHER OS08G0421900 PROTEIN 31 171 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04390 K25868 chromatin remodeling protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
402130 Hean11g00561 Hean4g04390
404088 Hean16g00977 Hean4g04390
404089 Hean16g00978 Hean4g04390
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr4:204880101 Hean8g01644 Hean-Chr8:45014100 dispersed
Hean Hean-Chr16:31273719 Hean4g04390 Hean-Chr4:204880101 wgd