AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04391 ATGATTAAGCAAATATTGAATAAGCTTCCTAGGAAATCATCTTCTAAATCAGTTCATAATGATGAAAGAAGCAATGAATTGGATTCTGCTGTTGTGAATTCAACTGGTGTGAGTGATAAAGTTTCAAAATTGAGTTTGACTGTTAAGTCAAAGTCAAAGTCAAATGTTGACTCAGTTCCTGCTTCTTATGAAGCATTACCGAGTTTTCGAATAGTGTCGAGTTCCGAAAAACACAACTTGTTCATCAAGAAGTTGAACATGTGTTGTGTGGTGTTCGATTTTAACGAACCCGAAAAGAATGTTAAAGAGAAAGACGTGAAGAAACAGACGTTGCTCGAGCTCGTTGATTACGTGTCGTCGGTTAATTCGAAGTTCAACGAGGTTACGATACAGGAGATAACGAAAATGGTGGCTGCGAATCTGTTCCGGGCTCTACCGAATTTGAACCACGAAAACAAAGCCGTGGATTTGTACGATCAAGAAGACGACGAGTTTTTTATGGACCCGTCGTGGCCGCATCTTCAAATCGTGTACGAGTTTCTTCTTCGGTTTGTGGCGTCACCCGAAACGAATGCGAAGCTTGCTAAACGGTACGTCGATCATTCGTTCGTGTTGAGGTTGCTTGATCTGTTTGATTCGGAAGATCAACGAGAACGCGAGTATTTGAAAACAATCTTGCATAGAATTTACGGGAAGTTCATGGTTCATCGACCGTTTATCCGGAAAGCGGTTAACAATATCTTTTATCATTTCATGTTCGAAAGTGAGAAACATAACGGGATTGCGCAATTACTTGAGGTGTTAGGGAGTATCGTTAACGGGTTTGCTTTGCCGTTGAAGGATGAACATAAGCTTTTTCTTGCTCACGTGTTGATCCCGCTTCATAAGCCGAAATGTTTGTCGATGTATCACCAGCAGCTCGTGTATTGTGTTTGTCAGTTTGTCGAAAAAGATGCGAAATTGGCGGATACTGTTGTTCGGGGGTTGCTCAAGTATTGGCCGGTAACTAGTAGTTCGAAAGAGGTCATGTTTCTTGGTGAATTGGAGGAAATTCTTGAAGTTACACAAGCTGCGGAGTTCGAAAAGTTTATGGCCCCTTTGTTCGGTCGAATCGGTCAATGCATCAACAGTTCACATTTTCAGGTGGCAGAACGCGCGTTGTTCTTGTGGAATAACGAACACATAAGGAATCTAACGACTCAAAACCGCAAAGTGATTCTTCCCATCATCTTCTCTCCCTTGGAGAAAAACACGCACGGTCATTGGAACCAAGCTGTTCAAAGCCTAACCTTAAACGTCAGAAAAATATTCTCAGACGCCGATCAGTCAACGTTCCAAGATTGTCTGGTCAAATACCAAGAAGACGAAACCAAAGAGAAAGAAAACATCGCAAAACGACAGTCAACATGGAACCGCCTAGATGCTATGGCAGTCGCCAAAACCAAGCCTATGGTCGTCTCAACGTCTGCCACTATCACCACCACCGTTGCCACCAGCACCACCGCCGAAACCGCCTCCACCGTTAAGCAAAGTACTGGTGGCAGGTAA 1548 43.22 MIKQILNKLPRKSSSKSVHNDERSNELDSAVVNSTGVSDKVSKLSLTVKSKSKSNVDSVPASYEALPSFRIVSSSEKHNLFIKKLNMCCVVFDFNEPEKNVKEKDVKKQTLLELVDYVSSVNSKFNEVTIQEITKMVAANLFRALPNLNHENKAVDLYDQEDDEFFMDPSWPHLQIVYEFLLRFVASPETNAKLAKRYVDHSFVLRLLDLFDSEDQREREYLKTILHRIYGKFMVHRPFIRKAVNNIFYHFMFESEKHNGIAQLLEVLGSIVNGFALPLKDEHKLFLAHVLIPLHKPKCLSMYHQQLVYCVCQFVEKDAKLADTVVRGLLKYWPVTSSSKEVMFLGELEEILEVTQAAEFEKFMAPLFGRIGQCINSSHFQVAERALFLWNNEHIRNLTTQNRKVILPIIFSPLEKNTHGHWNQAVQSLTLNVRKIFSDADQSTFQDCLVKYQEDETKEKENIAKRQSTWNRLDAMAVAKTKPMVVSTSATITTTVATSTTAETASTVKQSTGGR 515
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04391 515 FunFam Serine-threonine protein phosphatase 2A regulatory subunit 73 476 - -
Hean4g04391 515 SUPERFAMILY ARM repeat 78 460 IPR016024 -
Hean4g04391 515 PANTHER SERINE-THREONINE PROTEIN PHOSPHATASE 2A PP2A REGULATORY SUBUNIT B 1 481 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Hean4g04391 515 Pfam Protein phosphatase 2A regulatory B subunit (B56 family) 66 477 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Hean4g04391 515 Gene3D - 74 475 IPR011989 -
Hean4g04391 515 PIRSF PP2A-B56 3 513 IPR002554 GO:0000159(InterPro)|GO:0007165(InterPro)|GO:0019888(InterPro)
Hean4g04391 515 MobiDBLite consensus disorder prediction 1 30 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04391 K11584 serine/threonine-protein phosphatase 2A regulatory subunit B'
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr3:115869824 Hean4g04391 Hean-Chr4:204891114 dispersed
Hean Hean-Chr4:204891114 Hean8g00148 Hean-Chr8:1851206 dispersed
Hean Hean-Chr4:204891114 Hean7g02379 Hean-Chr7:132132777 transposed