AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04393 ATGGATTTTGAGTTGAGAAGAGCGAGAGAGAAATTGGAGAAAGAACAAAAGGATCGAAAAGAAAAGGCCAAATTACGATTGGAAAGAGAGAGAAAAGCCAAATTAGAAGCTAATCGCCACCGTGAAGCCATTGAATCTGCTCAGAGATCTCGTAGAATCCATGCAATGGAAGCACAAATTAAGGCAGAGCAACAAATGGAAGAAACTATATTTGCCGGTAGAGGAATTTCATTCAACCGCGTTCTTGAAGCGGTACCGTTTGAGGGTTCCGGAGATAAAATCAAACTACCACCTTCGTGTTTCAATGAACTATCAGAGCAAGGTGCTTTTGACAAAGGCCCCCTTCATTTCCAGTTATCAGTAGCTCACCAAGATCACGAGTCAACTCACGGGTCAACTCATGCTGGGGTCTTGGAATTCACTGCAGACGAAGGTACAGTCGGGATCCCGCCTCATATTTGGAATAACTTATACTCCAAACAAGATCCAAACACTCCTTTAGTTGAAGTTAAATATGTTTGGTTATCGAAGGGAACGTATGCGAAACTTCAATCGGAAGAACTCGGGTTCTCGGACATACCCAATCACAAAGCGGTTCTTGAAACGACTCTTCGCCAACACGCAACTCTTTCTCAAGATGATGTTTTGACGGTCAAACACGGTGTGTTAACTTTCCATCTACGCGTTCTTGAACTAAAACCGTCGTCAAGTGTGTCTGTTCTCGAAACCGATATCGAGGTTGATATTATGGGTCCTGATTCACTTCCCGAAAAAACCACCCAACACGTGTTGAAACCACTAACGTTTGGGAAATCAGAATCGGGAATTATAAACGAAGGAGAATACGCGTATTACAAGTTTTCAATAGACGATGACACATGGAAAATAATCGCTCTTGGAGATGTTGAAATTGAAGTGAATTTGGATTCGGAGTCGAATGGAGATACCGATCTTTATCTTTCCCGACACCCGTTATTGTTTCCAAACACGCACCAACACGGTTGGTCTAGCCACGATTTGGGGTCAAAGTGTTTGGTTCTCGGGTCAAAGGACCACACCTTGGGTCCGGGTAGCTATAGTGTCGGTGTATACGGGTTCAAAGGAACAACAAAATATAACGTTTCAGTAACCGTTAAAGACACGTCGAAGTCAAACGTTGGTCAACAACCCATGTCGTCTTCTTCAGATGGGTTAACATCAACAGCGGATACGGTAGAGTGCGGGAACTGCAAACATTATATACCCGTGAGAACCATAGCGCTTCACGAGGCGTATTGTAGAAGACATAACGTGATTTGTCAGCATACGGGTTGCGGTGTCGTGTTGAGAACCGAAGAGGTTAAGAATCACGTGCATTGCGTGAAATGTGAACAGGCTTTTCATAGTACCGAGATGGAAAAACACATGAAGGTGTTTCATGAGCCGTTATCCTGCGCGTGTGGGGTCGTTCTTGAGAAGACACAGATGGTGCAACACCAGTCGTCAGAGTGTGCCTTACGGCTAGTGACATGTCGGTTTTGTGGAGACATGGTCCAAGCTGGTTCACTAGCGGTTGATGCACGAGACCGGTTAAGAGGACTCTCGGAACATGAGAGTCTTTGTGGGTCCAGAACGGCGCCGTGTGACTCGTGTGGTCGTGCGGTTATGTTGAAAGAAATGGATATTCATCAAGTAGCTGTTCATCAGAAGAATTGA 1695 44.84 MDFELRRAREKLEKEQKDRKEKAKLRLERERKAKLEANRHREAIESAQRSRRIHAMEAQIKAEQQMEETIFAGRGISFNRVLEAVPFEGSGDKIKLPPSCFNELSEQGAFDKGPLHFQLSVAHQDHESTHGSTHAGVLEFTADEGTVGIPPHIWNNLYSKQDPNTPLVEVKYVWLSKGTYAKLQSEELGFSDIPNHKAVLETTLRQHATLSQDDVLTVKHGVLTFHLRVLELKPSSSVSVLETDIEVDIMGPDSLPEKTTQHVLKPLTFGKSESGIINEGEYAYYKFSIDDDTWKIIALGDVEIEVNLDSESNGDTDLYLSRHPLLFPNTHQHGWSSHDLGSKCLVLGSKDHTLGPGSYSVGVYGFKGTTKYNVSVTVKDTSKSNVGQQPMSSSSDGLTSTADTVECGNCKHYIPVRTIALHEAYCRRHNVICQHTGCGVVLRTEEVKNHVHCVKCEQAFHSTEMEKHMKVFHEPLSCACGVVLEKTQMVQHQSSECALRLVTCRFCGDMVQAGSLAVDARDRLRGLSEHESLCGSRTAPCDSCGRAVMLKEMDIHQVAVHQKN 564
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04393 564 Gene3D Zinc-RING finger domain, C3HC4 (zinc finger) 472 523 IPR013083 -
Hean4g04393 564 Pfam TRAFD1-XAF1, zinc finger 527 556 IPR049439 -
Hean4g04393 564 Gene3D - 177 250 - -
Hean4g04393 564 Gene3D - 271 384 - -
Hean4g04393 564 Pfam Ubiquitin fusion degradation protein UFD1 90 252 IPR004854 GO:0006511(InterPro)
Hean4g04393 564 Coils Coil 5 50 - -
Hean4g04393 564 MobiDBLite consensus disorder prediction 1 23 - -
Hean4g04393 564 Gene3D - 75 175 IPR042299 -
Hean4g04393 564 PANTHER UBIQUITIN FUSION DEGRADATON PROTEIN 1 1 536 IPR004854 GO:0006511(InterPro)|GO:0030433(PANTHER)|GO:0031593(PANTHER)|GO:0034098(PANTHER)|GO:0071712(PANTHER)
Hean4g04393 564 SUPERFAMILY TRAF domain-like 405 469 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04393 K14016 ubiquitin fusion degradation protein 1