AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04469 ATGAATCAAATTAGCAGAAAAAAATGGGGATTAAACCTGAAGAGAACAATCATATGGCGGGTGGCGTTTCTTCGGCGATGTGTTCGATCTCTGTGGCACCAAATTCTGACGTGTTGGATGGGGAAATCTGTCCGGTACCGGCAATTGTTGAATTCTGGTTCCGGGCAATTGATACCGACGTCTAGTCGGTATCTTTTGCCGGCGGAGAGGGCAACCGCGGTCGATATGGCTGCTGTGTCAGCCTCTAGTAGTGATCGGTTTGCTTCCGGTGAAATGACGTCATCTTTTGGTGGTGATGGTTGTGATCATGATGCTTCTGATTTGGTAGCTTTGAAGATTTGTTTGTTGGGTGATCAACAAATCGGCAAAACCAGCTTTTTGGCAAAATATGTGGGGAAAGAAAAAAATCAAGAAGAATCATCAACTAAAAAAATAGATCATATGGATAAAACCCTATGTGTCAAAGGAGCCAGAATCTCATATAACATATGGGAAGTTAGTGGTGATGCATTATATCCAGATGGTGATTCAAGGACTCTGATTCCTACAGCTTGTAAGGACTCTGTAGCGATCTTGTTCATGTTTGATCTAACAAGTCGTCGGACGCTTAACAGTGTTATCAATTGGCATCAACAAGCTAGGAATTATAATCAGACCGCGATTCCAGTAATGGTCGGGAGCAAATTTGATGAGTTTGTCCAGCTTCCGTTAGATTTACAATGGACGATCACAAGTGAGGCAAGAGCGTACGCGAAAGCTATAAACGCGCCCTTATTCTTCTCGAGTGCGTCTTACAACATAAATGTAAATAAAATCTTCAAGTTTGTTACTGCAAAGCTCTTTGATTTGTCATGGACCCTGGAACGTAATCTTACAGTTGGTGAACCTATTATTGATTTCTAG 903 42.08 MNQISRKKWGLNLKRTIIWRVAFLRRCVRSLWHQILTCWMGKSVRYRQLLNSGSGQLIPTSSRYLLPAERATAVDMAAVSASSSDRFASGEMTSSFGGDGCDHDASDLVALKICLLGDQQIGKTSFLAKYVGKEKNQEESSTKKIDHMDKTLCVKGARISYNIWEVSGDALYPDGDSRTLIPTACKDSVAILFMFDLTSRRTLNSVINWHQQARNYNQTAIPVMVGSKFDEFVQLPLDLQWTITSEARAYAKAINAPLFFSSASYNINVNKIFKFVTAKLFDLSWTLERNLTVGEPIIDF 300
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04469 300 ProSiteProfiles small GTPase Rab1 family profile. 104 300 - -
Hean4g04469 300 PANTHER - 109 299 - GO:0003924(PANTHER)|GO:0005525(PANTHER)
Hean4g04469 300 FunFam Septum-promoting GTP-binding protein 1 101 290 - -
Hean4g04469 300 Pfam Ras family 112 279 IPR001806 GO:0003924(InterPro)|GO:0005525(InterPro)
Hean4g04469 300 Gene3D - 102 290 IPR027417 -
Hean4g04469 300 PRINTS Transforming protein P21 ras signature 152 174 - -
Hean4g04469 300 PRINTS Transforming protein P21 ras signature 111 132 - -
Hean4g04469 300 PRINTS Transforming protein P21 ras signature 218 231 - -
Hean4g04469 300 PRINTS Transforming protein P21 ras signature 258 280 - -
Hean4g04469 300 SMART rab-sub-5 111 283 - -
Hean4g04469 300 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 111 291 IPR027417 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04469 K07976 Rab family, other
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Event-related genes

Select Gene_1 Gene_2 Event_name
404063 Hean16g00806 Hean4g04469
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr4:206103656 Hean8g02941 Hean-Chr8:108200484 dispersed
Hean Hean-Chr16:22836515 Hean4g04469 Hean-Chr4:206103656 wgd