AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04490 ATGAATTGCCACGTCACTAGCAAAAACCCTTGCAACTCCTATTTCAACCCACATCACTTTCTGCCTCCACTCTGCACCCTCTCACCAATGGCGGCTGCATCTTCTCCTTCATCCGCTCACCCCCAACTCATTTCATTCACCAAAACCCTAACCAACAAATCCCCATTCACCTCCAAATCCCTAATCTCCTTCAAACCCACTTTCAAACCCTTCACCATCAAAGCAATCACATCCGAAAAACCAACACAAACCCACAAATTCGACCACTGTTTCACCAAACAAGACGATGGGTATTTGTACTGCGAGGGTCTCAAGGTTCAAGAAGTCATGGAGGCTGTTGAAAAGAGACCCTTTTATCTTTACAGTAAGCCTCAGATAACGAGGAATGTTGAGGCGTATAAGGATGCTTTGGAGGGCTTGAATTCGATCATTGGTTATGCTATTAAGGCGAATAATAATTTTGTGATTTTGAAGCATTTGAGAGAGTTGGGTTGTGGGGCTGTTTTGGTTAGTGGGAATGAACTTAGATTGGCTCTTGCTGCTGGTTTTGATCCTACAAGGTGTGTTTTTAATGGAAACGGAAAGCTTTTGGAGGATCTTGTTCTTGCTGCTCAAGAAGGTGTGTTTGTTAACATAGATAGCGAATTTGATTTGGATAACATTGTATCGGCAGCAAGAATTGCTGGGAAAAAGGTCAATGTATTGCTTCGAATCAATCCGGATGTTGACCCTCAGGTCCATCCTTACGTTGCAACTGGAAACAAGAACTCCAAATTCGGTATACGGAACGAAAAATTGCAATGGTTTTTAGATGCCGTGAAGTCATATCCTGACGAACTTAAGCTAGTTGGGGCCCATTGCCATCTCGGATCCACCATTACCAAGGTTGACATTTTCAGAGATGCTGCAGCAATTATGGTGAAGTTCATCGACGAAATCCGTGCCCAAGGGTTCGATATTAGTCATTTAAACATTGGAGGTGGTCTCGGGATCGATTACTATCACACCGGCACCGTTCTTCCTACCCCAAGAGATCTCATCGACACAGTGCGGGAGCTAGTCAAGTCTCGAAATCTGAATTTGATTATCGAACCCGGGAGGTCGCTCATTGCTAACACTTGCTGTTTTGTGAATCGTGTTACGGGTGTGAAAACAAACGGTACAAAAAACTTTATCGTGATTGATGGAAGCATGGCTGAACTTATTCGTCCTAGCCTATACGATGCTTATCAACACATAGAACTGGTTTCGCCCCCACCATCTGATTCTGCTGTTTCGACTTTTGATGTTGTGGGCCCGGTTTGCGAGTCGGCTGATTTCTTGGGGAAAAATAGGGAACTTCCTGCACCAGCCAGGGGTTCTGGGCTTGTAGTTCATGATGCAGGTGCCTACTGCATGAGTATGGCTTCGACTTACAACCTCAAAATGCGCCCACCCGAGTACTGGGTTGAAGAAGATGGATCAGTAGCCAAGATCAGGCATGGGGAGACATTTGATGACCATATGAGATTTTTTGAGGGCCTCTCAGTCTAG 1533 44.94 MNCHVTSKNPCNSYFNPHHFLPPLCTLSPMAAASSPSSAHPQLISFTKTLTNKSPFTSKSLISFKPTFKPFTIKAITSEKPTQTHKFDHCFTKQDDGYLYCEGLKVQEVMEAVEKRPFYLYSKPQITRNVEAYKDALEGLNSIIGYAIKANNNFVILKHLRELGCGAVLVSGNELRLALAAGFDPTRCVFNGNGKLLEDLVLAAQEGVFVNIDSEFDLDNIVSAARIAGKKVNVLLRINPDVDPQVHPYVATGNKNSKFGIRNEKLQWFLDAVKSYPDELKLVGAHCHLGSTITKVDIFRDAAAIMVKFIDEIRAQGFDISHLNIGGGLGIDYYHTGTVLPTPRDLIDTVRELVKSRNLNLIIEPGRSLIANTCCFVNRVTGVKTNGTKNFIVIDGSMAELIRPSLYDAYQHIELVSPPPSDSAVSTFDVVGPVCESADFLGKNRELPAPARGSGLVVHDAGAYCMSMASTYNLKMRPPEYWVEEDGSVAKIRHGETFDDHMRFFEGLSV 510
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04490 510 NCBIfam diaminopimelate decarboxylase 93 502 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Hean4g04490 510 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 pyridoxal-P attachment site. 146 164 IPR022653 -
Hean4g04490 510 Pfam Pyridoxal-dependent decarboxylase, C-terminal sheet domain 372 462 IPR022643 GO:0003824(InterPro)
Hean4g04490 510 FunFam Diaminopimelate decarboxylase 123 368 - -
Hean4g04490 510 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 106 502 IPR009006 GO:0003824(InterPro)
Hean4g04490 510 Hamap Diaminopimelate decarboxylase [lysA]. 103 506 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Hean4g04490 510 PRINTS Diaminopimelate decarboxylase signature 252 261 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Hean4g04490 510 PRINTS Diaminopimelate decarboxylase signature 389 407 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Hean4g04490 510 PRINTS Diaminopimelate decarboxylase signature 164 181 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Hean4g04490 510 PRINTS Diaminopimelate decarboxylase signature 472 494 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Hean4g04490 510 FunFam Diaminopimelate decarboxylase 349 502 - -
Hean4g04490 510 SUPERFAMILY Alanine racemase C-terminal domain-like 347 503 IPR009006 GO:0003824(InterPro)
Hean4g04490 510 SUPERFAMILY PLP-binding barrel 116 372 IPR029066 -
Hean4g04490 510 CDD PLPDE-III-DapDC 117 483 IPR002986 GO:0008836(InterPro)|GO:0009089(InterPro)
Hean4g04490 510 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 125 371 IPR022644 GO:0003824(InterPro)
Hean4g04490 510 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 361 380 IPR000183 GO:0003824(InterPro)
Hean4g04490 510 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 166 178 IPR000183 GO:0003824(InterPro)
Hean4g04490 510 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 462 475 IPR000183 GO:0003824(InterPro)
Hean4g04490 510 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 279 292 IPR000183 GO:0003824(InterPro)
Hean4g04490 510 PRINTS Ornithine-diaminopimelate-arginine (ODA) decarboxylase family signature 146 164 IPR000183 GO:0003824(InterPro)
Hean4g04490 510 ProSitePatterns Orn-DAP-Arg decarboxylases family 2 signature 2. 315 330 IPR022657 -
Hean4g04490 510 Gene3D Alanine racemase 123 368 IPR029066 -
Hean4g04490 510 PANTHER DIAMINOPIMELATE DECARBOXYLASE 81 505 - GO:0008836(PANTHER)|GO:0009089(PANTHER)|GO:0009507(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04490 K01586 diaminopimelate decarboxylase [EC:4.1.1.20]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:23908853 Hean4g04490 Hean-Chr4:206353869 wgd