AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean4g04534 ATGGAGACGTTACAGGATCTCATCGAAGAGGCAAAGCTGCGTACAACATGGTGGGCGGTTTGTATCTTCATCGTCGCTTTATTCTTAACCAACACTAGCCAATCAATGTGGATGAATGTTCCAGCAGCGATTCTTCTGGTATCAGGTGTCCATTTTATAATAACCGAAGTGGAATTCCGGTGGAAGATTAGGAAACCTAACAGACAATCATACTTAGTACATCTAGAGAGAAAACAATTATCCGTGAATGATTCTCGTCTTACCACTTTGCCTCCTCAACCTAAATGGAAGAAAAAGATTGATTCACCGGTTGTTGAGGCTGCAATGGAGGATTTTGTTAGCAAGATTTTGCAAGAGTTTGTGGTTGATTCGTGGTATTCGGGTTTAACACCTGATAAAGAAGCGCCGCAGCTACTACATGCTGTTATTATGGAGGTTCTTGCTGAAATATCTGCGAGAGTCAAAGACATTAACCTTGTTGACCTGCTAACCAGGGATGTAGTTGATTTAGTAGGGGAACACTTAGAGGTTTTCAGGAAAAACCAAGCTGCAATTGGAAGAGAGGTTATGGTGACGTTATCTTCTGACGAACGAGATGAACGATTAAAACACCATCTAATGGCTTCTAAAGAGCTCCATCCCGCTTTAATATCTTCAGAGAGTGAGTACAAGTTTCTTAAACGAATTATCGGGGCGCTTTTGACGGCAGTTCTTAGACCACGAGAAGCGCAATGCCCTGTAGTTCGGTGCATTGCACGTGAGTTGTTAACGTGTTTGGTAGTCGAACCAGTTATGAGATTTGCATGCCCTGGGCGTATCAATGAGTTGATTGAGGCTCTTTTCCTTGCCAACAATACTAAAGAAGGAAAAGATACAGGTGGTAATCAGTCAACTGATGTAACGGGTCAAAGTCAAACCCCGAATCAGGAAAAAAGTCAAGATTCGACTTTCATGAAAGATGGGTCTACTAGTAGCCAAAAGAACGATACACCTAAAGACCAAAAGGAAACAGTTTTAAACCCATCTGGGCCCATGGCTTGTGGTCCGGTTCAAGACGAACCGTTGAACCCACCGACATCTGCATGGGCCCGGGTACTTGTGGCTGCAACCCAAAGAAGAACCGAAGTTCTTCATCCTGAAAATCTCGAAAATATGTGGACCAAAGGAAGAAACTACAAAAAGAGAACAAATAAGAAAATAGAAGGCTCGGGAATAAATGAAAATTCTAACGATCAAGTAACGGAGCAAAATGTTGATGGCGTTTTGAGCGATCAAAGCAAGACATCCGATCCGTCTGATTTAGTTGATGAAAGTAATTCTCATGTTGTTGGAAGTAAATCTAAAATGGAAAGATCAAATAGTGTTTCGGACTCGAACGTTCAAAATCAAGTTGGCGGATCGATAATTTCGGAGTTTTATAGCGCAAATGTAGATAATTTAAATAATATTAAGACCGTTTCGGATAAAGTAACACGTACTGAAGGGTGTGTTCCAAAGCTCAGGTGTCGGGTTCTGGGAGCATACTATGAAAATATTGACTCAAAATCGATTGCAGTTTATTCGATTGCGGTAACTGATGCTGATAATAAGACTTGGTTTGTGAAAAGAAGATACAGTAATTTTGATAGATTGCACCAATATCTGAAGAACACTCCTAATTATAATTTACAATTGCCTCCGAAAAGAATATTCTCATCTAACACAGAGGACAAATTTGTTTATAAACGTTGTATACAACTTAATAAATATCTTCAGGATCTTTTGTCTATAGCCAATATTGCAGATCAACATGAAGTATGGGACTTCTTGAGCATGTCTTCAAAGAGTTACTCTTTTGGACGATCATCATCCGTTGTGAGAACCTTAGCAGTCAATGTGGACGACGGTTCAATGAAAACAGTTACGAGCCCGTGTCTCCCATCTGATTTGGCTAACAGTTTTACTGACAATGAGGAAGGTGAAAAGGATAGATTAGTTAACCATGACGAAAAAGTGAGCCCCGCTGCACAACCTAATGAGCAGATTGTGGAAAACAGTGAAAACGTTCCTTCGGTTTCTGCTCTTAAAGAAGATCCACTTGGTGTGCCTGCAGAGTGGAGCCCACCAAATGTAAGTGTTCCGTTGCTAAATTTAGTGGACAAGATATTTCAACTCAAGAGACGCGGCTGGTTAAGACGTCAGGTTTTTTGGATATCAAAGCAAATTTTGCAACTAATGATGGAAGATGCTATTGATGATTGGCTTTTGAGGCAAATTCATTTCCTCAGGAGAGATAATATTGTTGCTCAAGGAATTCATATGCTCCAAGATATTCTCTGGCCTGAAGGCACATTTTTTCTAAAATCAAGGACAAGTCAAACAGATTCTTCGCAGTCAAACGACGGATCCGGCAATAAAAATAATAAACAAGGGTCTTTTGAGGAGCAGCTTGAAGCTGCACGTAGAGCTAGTGATATCAAGAAGATGATATTCAAGGGCGCACCAACTACATTGGTCAGCTTGATTGGACGTAAGCAATACAAGCGAAGTGCTAAAGACATATATTATTTTCTCCAGTCTGCTGTATGTTTGAAGCAACTCGGTTATGGTTTACTTGAACTTGCACTCATGGCGATTTTCCCGGAGCTGCAAGGCATCATATTAAATGTTCATGAGAAGAAAAAAGAGCAGGTGGTGTAG 2679 40.57 METLQDLIEEAKLRTTWWAVCIFIVALFLTNTSQSMWMNVPAAILLVSGVHFIITEVEFRWKIRKPNRQSYLVHLERKQLSVNDSRLTTLPPQPKWKKKIDSPVVEAAMEDFVSKILQEFVVDSWYSGLTPDKEAPQLLHAVIMEVLAEISARVKDINLVDLLTRDVVDLVGEHLEVFRKNQAAIGREVMVTLSSDERDERLKHHLMASKELHPALISSESEYKFLKRIIGALLTAVLRPREAQCPVVRCIARELLTCLVVEPVMRFACPGRINELIEALFLANNTKEGKDTGGNQSTDVTGQSQTPNQEKSQDSTFMKDGSTSSQKNDTPKDQKETVLNPSGPMACGPVQDEPLNPPTSAWARVLVAATQRRTEVLHPENLENMWTKGRNYKKRTNKKIEGSGINENSNDQVTEQNVDGVLSDQSKTSDPSDLVDESNSHVVGSKSKMERSNSVSDSNVQNQVGGSIISEFYSANVDNLNNIKTVSDKVTRTEGCVPKLRCRVLGAYYENIDSKSIAVYSIAVTDADNKTWFVKRRYSNFDRLHQYLKNTPNYNLQLPPKRIFSSNTEDKFVYKRCIQLNKYLQDLLSIANIADQHEVWDFLSMSSKSYSFGRSSSVVRTLAVNVDDGSMKTVTSPCLPSDLANSFTDNEEGEKDRLVNHDEKVSPAAQPNEQIVENSENVPSVSALKEDPLGVPAEWSPPNVSVPLLNLVDKIFQLKRRGWLRRQVFWISKQILQLMMEDAIDDWLLRQIHFLRRDNIVAQGIHMLQDILWPEGTFFLKSRTSQTDSSQSNDGSGNKNNKQGSFEEQLEAARRASDIKKMIFKGAPTTLVSLIGRKQYKRSAKDIYYFLQSAVCLKQLGYGLLELALMAIFPELQGIILNVHEKKKEQVV 892
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean4g04534 892 MobiDBLite consensus disorder prediction 288 358 - -
Hean4g04534 892 Pfam PX domain 528 604 IPR001683 GO:0035091(InterPro)
Hean4g04534 892 MobiDBLite consensus disorder prediction 400 460 - -
Hean4g04534 892 MobiDBLite consensus disorder prediction 288 328 - -
Hean4g04534 892 ProSiteProfiles PX domain profile. 498 610 IPR001683 GO:0035091(InterPro)
Hean4g04534 892 SMART PX-2 496 606 IPR001683 GO:0035091(InterPro)
Hean4g04534 892 Gene3D - 502 614 IPR036871 GO:0035091(InterPro)
Hean4g04534 892 PANTHER PX SERINE-THREONINE KINASE PXK 3 888 IPR051837 -
Hean4g04534 892 SUPERFAMILY PX domain 500 607 IPR036871 GO:0035091(InterPro)
Hean4g04534 892 MobiDBLite consensus disorder prediction 784 807 - -
Hean4g04534 892 Pfam Sorting nexin C terminal 723 853 IPR013937 -
Hean4g04534 892 MobiDBLite consensus disorder prediction 402 460 - -
Hean4g04534 892 ProSiteProfiles PXA domain profile. 102 285 IPR003114 -
Hean4g04534 892 Pfam PXA domain 102 279 IPR003114 -
Hean4g04534 892 SMART PXA-3 102 285 IPR003114 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean4g04534 K17925 sorting nexin-13
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Event-related genes

Select Gene_1 Gene_2 Event_name
100787 Hean10g02479 Hean4g04534
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr16:7033312 Hean4g04534 Hean-Chr4:206928718 dispersed
Hean Hean-Chr16:21184429 Hean4g04534 Hean-Chr4:206928718 dispersed
Hean Hean-Chr4:206928718 Hean4g04536 Hean-Chr4:206947415 proximal
Hean Hean-Chr16:21192299 Hean4g04534 Hean-Chr4:206928718 transposed
Hean Hean-Chr10:135888869 Hean4g04534 Hean-Chr4:206928718 wgd