AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean6g02887 ATGAACAAACTGGGCAGAGGGCATCGCGACAAAGTCCAACAATTCATGACAATCACTGGAGCAAGTGAAAAAGTTGCTCTCCAGGCTTTAAAGTCTAGCGATTGGCATCTTGATGGTGCATTTGATATCTTTTACAGCCAGCCTCATGCTAAATCATTCACAGATACACGCCATTTAGAGGAATTGTACAACAGATACAAAGATCCTTATACTGATATGATTATGGCTGATGGCATTACCACCCTCTGCAATGATCTTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTTTCATGGCACATGAAGGCTGCTACCATGTGTGAGTTCTCGAAACAGGAATTCGTTGGTGGCTTGCAGTCTTTAGGGATAGATTCACTGGAGAAGTTCCGTGAAAAGATACCTTTTATGCGTTCTGAGCTGAAGGATGATCAAAAATTCAAGGAGATCTATAATTTTGCGTTTGGCTGGGCAAAAGAGAAGGGTCAGAAGTCTTTGGCATTGGATACAGCAATTGGGATGTGGCAATTGTTGTTCGAAGAAAAACAGTGGCCATTGGTTGAGCATTGGTGCCAGTTTTTACAGGCACGGCATAATAAAGCTATTTCTCGAGATACTTGGTCTCAGTTACTGGAATTTGCAAGAAGTGTGGACCCTACACTATCAAATTATGATGCTGAAGGTGCTTGGCCATATTTAATTGATGAATTTGTGGAGTACTTAACAGAAAATGGCATCATTCAGACGGGGCGGATGAAGGAGTGGTTGTAA 771 41.76 MNKLGRGHRDKVQQFMTITGASEKVALQALKSSDWHLDGAFDIFYSQPHAKSFTDTRHLEELYNRYKDPYTDMIMADGITTLCNDLQVDPQDIVMLVVSWHMKAATMCEFSKQEFVGGLQSLGIDSLEKFREKIPFMRSELKDDQKFKEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFEEKQWPLVEHWCQFLQARHNKAISRDTWSQLLEFARSVDPTLSNYDAEGAWPYLIDEFVEYLTENGIIQTGRMKEWL 256
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean6g02887 256 PANTHER RP42 RELATED 24 244 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Hean6g02887 256 Gene3D - 52 142 - -
Hean6g02887 256 ProSiteProfiles DCUN1 domain profile. 54 242 IPR005176 -
Hean6g02887 256 SUPERFAMILY UBA-like 7 46 IPR009060 GO:0005515(InterPro)
Hean6g02887 256 FunFam Defective in cullin neddylation protein 143 248 - -
Hean6g02887 256 CDD UBA-DCNL 8 48 - -
Hean6g02887 256 Pfam Cullin binding 130 240 IPR005176 -
Hean6g02887 256 FunFam Defective in cullin neddylation protein 53 142 - -
Hean6g02887 256 FunFam Defective in cullin neddylation protein 6 47 - -
Hean6g02887 256 Pfam UBA-like domain 9 47 - -
Hean6g02887 256 Gene3D Cullin, PONY binding domain 143 249 IPR042460 -
Hean6g02887 256 Gene3D - 6 47 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean6g02887 K17822 DCN1-like protein 1/2
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hean Hean-Chr13:116920836 Hean6g02887 Hean-Chr6:103422863 dispersed
Hean Hean-Chr13:120814934 Hean6g02887 Hean-Chr6:103422863 dispersed
Hean Hean-Chr6:103422863 Hean9g03391 Hean-Chr9:158396815 dispersed
Hean Hean-Chr6:103422863 Hean17g01691 Hean-Chr17:40868043 transposed