AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hean8g00415 | ATGGAACAAGAATCAAGAAATCCATTTCTTCAGCCTAACATTATCGAATCTGCTAACGGGTATAGCTCAAGAATCAACCCGGATAAACGCGGGCGCCAAAACTTCATCGGGCCCGGTTTTCCCGGGTTGAAAAAACGAGGTCATACCCTCGGAAACCGTTCTTGGATCAAAATCGAGCAAAATGGGAACTCTAGAGTTGTGGAGTTAGATAAGGCTACTGTAATGAGACATTGTTCTTTACCGGCTAGAGATCTTCGGCTTTTGGATCCGCTTTTTATATATCCGTCCACAATATTAGGTCGTGAGAAGGCGATTGTAGTTAGTCTTGAACAGATTAGATGTATAATTACGGCTGATGAGGTTTTTCTTATGAATTCGTTGGATGGATCTGTCGTTCAGTACAAATCTGAATTGTGCAAACGCCTTCAGAGAGAAAAATACCACTCAGATGATCTAGCGTTTGAGTTTAAAGCATTGGAACTAGCTTTGGAGTTTGCATGCCTCACTCTCGATACTCAGGTGAAGGAGTTGGAAATGGAAATTCATCCTGTGCTTGATGAACTTGCAAAATCAATAAGTACTCTCAATCTTGAACGTGTTCGTAGATTCAAAGGCCACCTTCTAGCATTGACTCAACGGGTGCAAAAGGTATATGATGAAATAGAACACCTAATGAACGATGATGGAGATATGGCTGAGATGTACTTAACTGAGAAGAAACAAAGGAACTTGTGTAACGATTTATACGATCAAGTACAAGGAAATGATGATACTAGCGGGCCTGAAGTGGGGTTAGGATCAAAATCCGCTCCCGTATCTCCTGTGGGGTCCGCTGTGGGGTCCGCAAGTGGTGCGCATAAACTGCAAAGGGCCTTTAGTAATGTAAGTGCACACAAACATGGAAGCTTGTTGGGTTCATCAGTGACTGGTGAAACCGAAAACATAGATCAACTTGAGATGTTGCTGGAAGCCTACTTTGTTGGAATTGATAACACTCTAAACAAGCTGCTTTCGCTCAAGGAGTATATTGATGACACCGAAGATCTGATCAACATTAAACTTGGTAATGTCCAGAATAAGCTGATTAAGTTCGAGCTGCTCTTGACGGCGGCTACTTTTTTGGCAACCGTATTTGCAGTAGTGACAGCTGTATTCGGAATGAACTTTGAAGATGAAGTTTTCGATGAACCAAACAGATTCCACTGGGTCGTTTCTACGAGTGCAGTGTTATGTGGAGTTTTGTATATCTGTTTCTTGCTTTATTTTAAACATAAGAAAGTTTTTCCTCTCTAG | 1293 | 41.69 | MEQESRNPFLQPNIIESANGYSSRINPDKRGRQNFIGPGFPGLKKRGHTLGNRSWIKIEQNGNSRVVELDKATVMRHCSLPARDLRLLDPLFIYPSTILGREKAIVVSLEQIRCIITADEVFLMNSLDGSVVQYKSELCKRLQREKYHSDDLAFEFKALELALEFACLTLDTQVKELEMEIHPVLDELAKSISTLNLERVRRFKGHLLALTQRVQKVYDEIEHLMNDDGDMAEMYLTEKKQRNLCNDLYDQVQGNDDTSGPEVGLGSKSAPVSPVGSAVGSASGAHKLQRAFSNVSAHKHGSLLGSSVTGETENIDQLEMLLEAYFVGIDNTLNKLLSLKEYIDDTEDLINIKLGNVQNKLIKFELLLTAATFLATVFAVVTAVFGMNFEDEVFDEPNRFHWVVSTSAVLCGVLYICFLLYFKHKKVFPL | 430 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hean8g00415 | 430 | Coils | Coil | 207 | 227 | - | - | |
| Hean8g00415 | 430 | Gene3D | - | 45 | 126 | - | - | |
| Hean8g00415 | 430 | MobiDBLite | consensus disorder prediction | 19 | 38 | - | - | |
| Hean8g00415 | 430 | FunFam | Magnesium transporter MRS2-1 | 42 | 126 | - | - | |
| Hean8g00415 | 430 | Pfam | Magnesium transporter MRS2-like | 61 | 243 | - | - | |
| Hean8g00415 | 430 | Gene3D | Magnesium transport protein CorA, transmembrane region | 129 | 361 | - | - | |
| Hean8g00415 | 430 | PANTHER | RNA SPLICING PROTEIN MRS2, MITOCHONDRIAL | 40 | 427 | IPR039204 | GO:0015095(PANTHER)|GO:0015693(PANTHER) | |
| Hean8g00415 | 430 | CDD | Mrs2-Mfm1p-like | 55 | 427 | IPR039204 | - | |
| Hean8g00415 | 430 | SUPERFAMILY | Magnesium transport protein CorA, transmembrane region | 367 | 419 | IPR045863 | - | |
| Hean8g00415 | 430 | Gene3D | Magnesium transport protein CorA, transmembrane region | 368 | 426 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hean8g00415 | K16075 | magnesium transporter |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hean | Hean-Chr8:7108572 | Hean9g04460 | Hean-Chr9:183098751 | dispersed | |
| Hean | Hean-Chr8:6961825 | Hean8g00415 | Hean-Chr8:7108572 | proximal |
| Select | Gene | Event_type | S_start | S_end | Function | Ath_gene | Identity(%) | E-value | Score |
|---|---|---|---|---|---|---|---|---|---|
| Hean16g02441 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 66.885 | 0.0 | 581.0 | |
| Hean15g00561 | . | 1 | 386 | MRS2 gene family | AT5G09690 | 72.494 | 0.0 | 556.0 | |
| Hean15g02133 | . | 300 | 393 | MRS2 gene family | AT3G58970 | 74.468 | 1.44e-39 | 140.0 | |
| Hean14g03074 | ACH | 123 | 459 | MRS2 gene family | AT5G22830 | 80.119 | 0.0 | 530.0 | |
| Hean12g02883 | . | 19 | 386 | MRS2 gene family | AT5G09690 | 75.0 | 0.0 | 541.0 | |
| Hean11g01808 | . | 1 | 436 | MRS2 gene family | AT3G58970 | 66.667 | 0.0 | 565.0 | |
| Hean10g00423 | . | 1 | 386 | MRS2 gene family | AT5G09690 | 65.657 | 8.48e-180 | 503.0 | |
| Hean10g02286 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 66.593 | 0.0 | 569.0 | |
| Hean9g02791 | . | 19 | 386 | MRS2 gene family | AT5G09690 | 74.728 | 0.0 | 539.0 | |
| Hean9g04458 | ACH | 1 | 442 | MRS2 gene family | AT1G16010 | 78.475 | 0.0 | 682.0 | |
| Hean9g04460 | ACH | 1 | 442 | MRS2 gene family | AT1G16010 | 78.475 | 0.0 | 681.0 | |
| Hean8g00410 | . | 346 | 421 | MRS2 gene family | AT2G03620 | 61.842 | 5.25e-30 | 107.0 | |
| Hean8g00415 | . | 3 | 421 | MRS2 gene family | AT2G03620 | 64.612 | 1.59e-176 | 498.0 | |
| Hean8g03067 | ACH,WGDA | 1 | 442 | MRS2 gene family | AT1G16010 | 72.889 | 0.0 | 629.0 | |
| Hean7g01635 | . | 1 | 134 | MRS2 gene family | AT1G16010 | 80.292 | 8.92e-69 | 215.0 | |
| Hean5g02821 | ACH,WGDA | 1 | 442 | MRS2 gene family | AT1G16010 | 74.049 | 0.0 | 638.0 | |
| Hean4g01645 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 59.43 | 2.09e-172 | 491.0 | |
| Hean3g01723 | . | 47 | 484 | MRS2 gene family | AT3G19640 | 59.002 | 9.14e-179 | 509.0 | |
| Hean2g00262 | ACH | 1 | 442 | MRS2 gene family | AT1G16010 | 79.018 | 0.0 | 702.0 | |
| Hean2g02940 | ACH | 123 | 459 | MRS2 gene family | AT5G22830 | 75.444 | 4.79e-173 | 491.0 |