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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hean8g00426 ATGCCGACTTTAACGAAGCTATACTCGATGCAAGAAGCTTCAGAGCACAATTCCGCCGGTGATTGCTGGATTGTTGTTGACGGCAAGGTCTATGATGTGTCATCATATCTAGAAGAACATCCAGGTGGTGATGATGTCATCCTTCAGGTTACAGGGAAAGATGCGACGGATGAGTTTGAAGACGCGGGCCACAGCAAGAGTGCCAGGGAACTTATGGAGACTTTCTGTGTTGGTGAGCTGGACCCGTCGGACATCCCTCAACTTGAAGTTGTATCGGAGAAACAAAAAGGTTACATCCCTGAGAAGCTGGTTGACCTAAGCAAGCAATACTGGGCGGCTCCAGTGGCAGTTGTCGGCATATCGGTTGTTGTCACCTTCTTGTACTTACGCAACAAGTAG 399 48.62 MPTLTKLYSMQEASEHNSAGDCWIVVDGKVYDVSSYLEEHPGGDDVILQVTGKDATDEFEDAGHSKSARELMETFCVGELDPSDIPQLEVVSEKQKGYIPEKLVDLSKQYWAAPVAVVGISVVVTFLYLRNK 132
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hean8g00426 132 SMART Cyt-b5-2 8 81 IPR001199 -
Hean8g00426 132 PRINTS Cytochrome B5 signature 40 54 IPR001199 -
Hean8g00426 132 PRINTS Cytochrome B5 signature 30 40 IPR001199 -
Hean8g00426 132 PRINTS Cytochrome B5 signature 55 62 IPR001199 -
Hean8g00426 132 PRINTS Cytochrome B5 signature 68 80 IPR001199 -
Hean8g00426 132 FunFam Cytochrome b5 type B 3 85 - -
Hean8g00426 132 Gene3D - 3 86 IPR036400 -
Hean8g00426 132 SUPERFAMILY Cytochrome b5-like heme-steroid binding domain 4 89 IPR036400 -
Hean8g00426 132 PANTHER CYTOCHROME B5 4 128 IPR050668 GO:0016020(PANTHER)|GO:0020037(PANTHER)|GO:0043231(PANTHER)
Hean8g00426 132 ProSitePatterns Cytochrome b5 family, heme-binding domain signature. 36 43 IPR018506 GO:0020037(InterPro)
Hean8g00426 132 ProSiteProfiles Cytochrome b5 family, heme-binding domain profile. 5 81 IPR001199 -
Hean8g00426 132 Pfam Cytochrome b5-like Heme-Steroid binding domain 10 81 IPR001199 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hean8g00426 K23490 cytochrome b5
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3246327 Hean Hean7g03269 Hean-Chr7:149395315 Hean8g00426 Hean-Chr8:7474068
3246571 Hean Hean8g00426 Hean-Chr8:7474068 Hean8g01967 Hean-Chr8:60098819
3276639 Hean Hean8g00426 Hean-Chr8:7474068 Hean6g01016 Hean-Chr6:21971533
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hean16g01441 . 2 120 NADPH P450 reductases gene family AT1G60660 63.025 2.07e-50 154.0
Hean15g03269 WGDA 38 273 NADPH P450 reductases gene family AT5G17770 36.923 2.07e-46 166.0
Hean14g02556 . 30 133 NADPH P450 reductases gene family AT2G32720 62.162 9.63e-45 141.0
Hean13g02282 . 31 281 NADPH P450 reductases gene family AT5G17770 78.486 7.37e-146 408.0
Hean12g00270 . 39 281 NADPH P450 reductases gene family AT5G17770 41.379 4.06e-65 205.0
Hean12g00390 . 6 83 NADPH P450 reductases gene family AT1G26340 38.462 2.87e-14 65.5
Hean9g02333 WGDA 38 273 NADPH P450 reductases gene family AT5G17770 38.76 4.73e-50 176.0
Hean9g02335 WGDA 124 273 NADPH P450 reductases gene family AT5G17770 38.272 3.53e-34 119.0
Hean8g00426 . 1 134 NADPH P450 reductases gene family AT1G26340 61.94 1.71e-59 178.0
Hean8g01967 ACH 1 133 NADPH P450 reductases gene family AT5G53560 74.436 4.93e-73 213.0
Hean7g02211 . 30 52 NADPH P450 reductases gene family AT2G32720 86.957 1.17e-09 48.1
Hean7g03269 . 5 126 NADPH P450 reductases gene family AT5G53560 61.789 4.00e-51 157.0
Hean6g00814 WGDA 1 132 NADPH P450 reductases gene family AT5G53560 51.88 2.37e-48 150.0
Hean6g00815 . 1 132 NADPH P450 reductases gene family AT5G53560 56.391 3.04e-51 157.0
Hean6g01016 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 72.868 4.97e-72 209.0
Hean6g01863 WGDA 30 281 NADPH P450 reductases gene family AT5G17770 82.54 4.21e-161 447.0
Hean4g01829 . 1 133 NADPH P450 reductases gene family AT5G53560 74.436 4.93e-73 213.0
Hean4g02310 . 1 124 NADPH P450 reductases gene family AT5G53560 44.444 1.13e-41 134.0
Hean4g02311 ACH 1 128 NADPH P450 reductases gene family AT5G53560 56.296 7.54e-54 164.0
Hean4g02312 . 1 127 NADPH P450 reductases gene family AT5G53560 50.781 3.43e-45 142.0
Hean4g02313 . 1 130 NADPH P450 reductases gene family AT5G53560 53.846 6.46e-49 151.0
Hean4g02577 ACH,WGDA 5 133 NADPH P450 reductases gene family AT2G32720 72.093 2.44e-71 208.0
Hean4g03634 WGDA 1 133 NADPH P450 reductases gene family AT5G53560 54.815 6.64e-50 154.0
Hean4g04238 WGDA 30 281 NADPH P450 reductases gene family AT5G17770 82.54 1.13e-161 448.0
Hean3g04377 . 1 134 NADPH P450 reductases gene family AT5G48810 54.478 4.58e-50 154.0
Hean1g00124 . 47 101 NADPH P450 reductases gene family AT1G60660 78.182 7.29e-29 97.1
Hean1g00874 . 31 281 NADPH P450 reductases gene family AT5G17770 74.104 3.96e-140 394.0
Hean1g02123 . 3 83 NADPH P450 reductases gene family AT5G53560 28.395 8.23e-06 41.6