AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu10g00237 ATGATTGATCCTTATATATACACACACACTTTCAAGTTTAAACATGCCACTCAACGCTCTTCCCACCACCCAAAACAACCACCCACCACCCACCGCCGCATCTCCGGCGAAATGTATTCACCGGCGGCGATCACTCTCCTCCTCCTCCTCCTCCTCCTCCTCTTAACCATCACCACCACCACCAATGGTCACAACATCACCCGTATCCTCCAAAAAAACCCAGAATTCTCAACCTTCAACCACTACCTAACCCTAACCCACCTCGCCGGAGAGATCAACCGTCGGCAAACCATCACTGTCTGCGCCGTCGACAATGCCGCCATGTCCGACTTAACCGCCAAAGGCCTCTCACTCGAAACTATCAAAAATGTCCTCTCACTTCACGTCTTTGCAGACTATTATGGCGCCAAAAAGCTCCATGAGATCACCAAAGGCTCCACCTCCACCGCCACCATGTACCAAGCCACCGGCGAAGCCCCTGGCACCACCGGATTCGTTCACATCACTGACGCTAAAGGTGGTAAAGTTCGGTTCACCCCTGAAGATAATCCCTCTCAAACCGACGTCGTTTTTGTTAAATCGGTTCTTGAAATGCCCTACAACATTTCTGTCATCCAGATCAGCCAGGTTTTGAACTCGCCCGAGGCGATGGCACCAACGTCGGCACCGGATCTTAACTTAACGTCGTTGCTACAACGCGAGGGTTGCAAATCGTTTTACAATCTGTTAACAACTTCCGGTGCGATCGGAACGTTTTTGAGCAGCGTTGACGGTGGAGTAACGGTGTTTTGTCCGAGTGACGACGCGGTAAAGGAGTTCGGGCCAAAATACAAAAACCTAACGGCGGAAGGTAAGACGGCGTTACTGTTGTACCACGGTGTTCCAACATACAACTCCATGGGGATGTTGAGATCCAGCAACGGCTTGATGAACACGTTAGCGACCGAAGGAGCGAATAAGTACGATTTCACGGTGCAAAACGACGGCGAGGATGTGAAGTTGAAGACGAAAGTTGTTACGGCGGAGATTTCAGGGACGGTAGTTGATGATGAGCCGGTGGCGATTTATCGGATTGATAAGGTTTTGATGCCGCGGGAGTTGTTTAAGGCGACGGTGGCCGCGAAGAAAGGTGACGATGCGGAAGCGCCTGGACCAGACTCGTCGGATGATTCTGGTGATGATAATGCGGCGGATCAGAAGGCGAATTCCAGTGGAAAGGTGGTGGCACCGGTTGTTATGGTGTTGTTTATTGTTGTTGCGTTCTTGTGA 1269 51.06 MIDPYIYTHTFKFKHATQRSSHHPKQPPTTHRRISGEMYSPAAITLLLLLLLLLLTITTTTNGHNITRILQKNPEFSTFNHYLTLTHLAGEINRRQTITVCAVDNAAMSDLTAKGLSLETIKNVLSLHVFADYYGAKKLHEITKGSTSTATMYQATGEAPGTTGFVHITDAKGGKVRFTPEDNPSQTDVVFVKSVLEMPYNISVIQISQVLNSPEAMAPTSAPDLNLTSLLQREGCKSFYNLLTTSGAIGTFLSSVDGGVTVFCPSDDAVKEFGPKYKNLTAEGKTALLLYHGVPTYNSMGMLRSSNGLMNTLATEGANKYDFTVQNDGEDVKLKTKVVTAEISGTVVDDEPVAIYRIDKVLMPRELFKATVAAKKGDDAEAPGPDSSDDSGDDNAADQKANSSGKVVAPVVMVLFIVVAFL 422
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu10g00237 422 MobiDBLite consensus disorder prediction 374 403 - -
Hetu10g00237 422 MobiDBLite consensus disorder prediction 15 29 - -
Hetu10g00237 422 Gene3D FAS1 domain 63 212 IPR036378 -
Hetu10g00237 422 Pfam Fasciclin domain 235 364 IPR000782 -
Hetu10g00237 422 Pfam Fasciclin domain 74 155 IPR000782 -
Hetu10g00237 422 PANTHER FASCICLIN-LIKE ARABINOGALACTAN PROTEIN 42 411 IPR033254 GO:0046658(PANTHER)
Hetu10g00237 422 MobiDBLite consensus disorder prediction 14 33 - -
Hetu10g00237 422 FunFam Fasciclin-like arabinogalactan protein 10 215 365 - -
Hetu10g00237 422 ProSiteProfiles FAS1-BIgH3 domain profile. 63 211 IPR000782 -
Hetu10g00237 422 ProSiteProfiles FAS1-BIgH3 domain profile. 223 362 IPR000782 -
Hetu10g00237 422 SMART fasc-3 261 365 IPR000782 -
Hetu10g00237 422 SMART fasc-3 99 215 IPR000782 -
Hetu10g00237 422 SUPERFAMILY FAS1 domain 69 214 IPR036378 -
Hetu10g00237 422 Gene3D FAS1 domain 232 364 IPR036378 -
Hetu10g00237 422 FunFam Fasciclin-like arabinogalactan protein 2 62 204 - -
Hetu10g00237 422 SUPERFAMILY FAS1 domain 230 364 IPR036378 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu10g00237 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr10:9809917 Hetu12g00219 Hetu-Chr12:8127913 dispersed
Hetu Hetu-Chr10:9809917 Hetu11g00220 Hetu-Chr11:7711861 wgd
Hetu Hetu-Chr10:9809917 Hetu12g00217 Hetu-Chr12:8119023 wgd