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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu12g00101 ATGTTTGCATCATTTCTTGAATCCTTTAAGCCAAAAAGCTCTCAAGAAAGAGAAGCAATCATGAGAATGAAAAGAAACATGTCTTACAAGATTTATCTCCTAACTCTTCTCATTGTAGCCTCACTTGTTTCATCATCATTTGCAGCCCGTTGCGGTTCGTCCATTCCAATGGTGAAACTTGGTGCAACTGATCAAAATCAGGAATCTTTATATGAAGAAGAAGATCAAATTTTGGGGAGGGATGATATTATTCACGAGAGGCTGCTAAGGGTTAATACAAAAGATTATGGGCGATCGGATCCTGCACCGACGTTTGTCAAGCCTCCGTTTAAACTCATACCGAACTAG 348 39.66 MFASFLESFKPKSSQEREAIMRMKRNMSYKIYLLTLLIVASLVSSSFAARCGSSIPMVKLGATDQNQESLYEEEDQILGRDDIIHERLLRVNTKDYGRSDPAPTFVKPPFKLIPN 115
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu12g00101 115 PANTHER PROTEIN CASPARIAN STRIP INTEGRITY FACTOR 1-RELATED 23 115 IPR038974 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu12g00101 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
276970 Hetu10g00124 Hetu12g00101
407321 Hetu12g00101 Hetu46g01007
407322 Hetu12g00101 Hetu47g00943
407323 Hetu12g00101 Hetu47g00983
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr10:4683348 Hetu12g00101 Hetu-Chr12:4157489 wgd
Hetu Hetu-Chr11:4091116 Hetu12g00101 Hetu-Chr12:4157489 wgd
Hetu Hetu-Chr12:4157489 Hetu46g01007 Hetu-Chr46:51072264 wgd
Hetu Hetu-Chr12:4157489 Hetu47g00983 Hetu-Chr47:55664841 wgd
Hetu Hetu-Chr12:4157489 Hetu48g00883 Hetu-Chr48:47312999 wgd