AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu16g02407 ATGAACAAACTGGGCAGAGGGCATCGTGACAAAGTACAACAATTCATGACAATCACTGGAGCAAGTGAAAAAGTTGCTCTCCAGGCTTTAAAGTCTAGCGATTGGCATCTTGATGGTGCATTTGATATCTTTTACAGCCAGCCTCATGCTAAATCATTCACAGATACACGCCATTTAGAGGAATTGTACAACAGATACAAAGATCCTTATACTGATATGATTATGGCTGATGGCATTACCACCCTCTGCAATGATCTTCAGGTAATAATAACATACATTTGCATTGCTCAGGTGGATCCTCAAGATATTGTTATGTTAGTTGTTTCATGGCACATGAAGGCTGCTACCATGTGTGAATTCTCGAAACAGGAATTTGTTGGTGGCTTGCAGTCTTTAGGGATAGATTCACGGGAGAAGTTCCGTGAAAAGATACCTTTTATGCGTTCTGAGCTGAAGGATGATCAAAAATTCAAGGAGATCTATAATTTTGCGTTTGGCTGGGCAAAAGAGAAGGGTCAGAAGTCTTTGGCATTGGATACAGCAATTGGGATGTGGCAATTGTTGTTTGAAGAAAAACAGTGGCCATTGGTTGAGCATTGGTGCCAGTTTTTACAGGCACGGCATAATAAAGCTATTTCTCGAGATACTTGGTCTCAGTTACTGGAATTTGCAAGAAGTGTGGACCCTACACTATCAAATTATGATGCTGAAGGTGCTTGGCCATATTTAATTGATGAATTTGTGGAGTACTTAACAGAAAATGGCATCATTCAGAAGGGGCGGATGAAGGAGTGGTTGTAA 801 40.7 MNKLGRGHRDKVQQFMTITGASEKVALQALKSSDWHLDGAFDIFYSQPHAKSFTDTRHLEELYNRYKDPYTDMIMADGITTLCNDLQVIITYICIAQVDPQDIVMLVVSWHMKAATMCEFSKQEFVGGLQSLGIDSREKFREKIPFMRSELKDDQKFKEIYNFAFGWAKEKGQKSLALDTAIGMWQLLFEEKQWPLVEHWCQFLQARHNKAISRDTWSQLLEFARSVDPTLSNYDAEGAWPYLIDEFVEYLTENGIIQKGRMKEWL 266
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu16g02407 266 Gene3D - 52 152 - -
Hetu16g02407 266 ProSiteProfiles DCUN1 domain profile. 54 252 IPR005176 -
Hetu16g02407 266 SUPERFAMILY UBA-like 7 46 IPR009060 GO:0005515(InterPro)
Hetu16g02407 266 Gene3D - 6 47 - -
Hetu16g02407 266 CDD UBA-DCNL 8 48 - -
Hetu16g02407 266 FunFam Defective in cullin neddylation protein 153 258 - -
Hetu16g02407 266 Pfam UBA-like domain 9 47 - -
Hetu16g02407 266 Gene3D Cullin, PONY binding domain 153 260 IPR042460 -
Hetu16g02407 266 PANTHER RP42 RELATED 24 254 IPR014764 GO:0000151(PANTHER)|GO:0031624(PANTHER)|GO:0032182(PANTHER)|GO:0045116(PANTHER)|GO:0097602(PANTHER)
Hetu16g02407 266 FunFam Defective in cullin neddylation protein 6 47 - -
Hetu16g02407 266 Pfam Cullin binding 140 250 IPR005176 -
Hetu16g02407 266 FunFam DCN1-like protein 54 152 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu16g02407 K17822 DCN1-like protein 1/2
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Event-related genes

Select Gene_1 Gene_2 Event_name
282001 Hetu16g02407 Hetu17g02320
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr16:124822719 Hetu34g01505 Hetu-Chr34:117430951 dispersed
Hetu Hetu-Chr16:124822719 Hetu17g02320 Hetu-Chr17:119148210 wgd
Hetu Hetu-Chr16:124822719 Hetu18g02610 Hetu-Chr18:127394526 wgd
Hetu Hetu-Chr16:124822719 Hetu18g02594 Hetu-Chr18:125068881 wgd