AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu16g02471 ATGACCAGGAAAGGGAGTTGTAATTCAAATGTGGCCAATGAGGAGGTCATCCGGACACTCATAATCCAATCAGAGGATCTTGTTCAAGTAGTCGCAAAGAAAGTAACAATTCCCGCAGATGGTTTTGCTGGTCATGGAACTGGAGATGAAACAGGGGCTGCTGCATGCTCTTTTCCTTCTAATGGAATTTCACTGACAGAATCAAATAAAACAATGACTGGCAAGTCAAATGTTGGTCAACCACACACTAATCAAACAAGATGCTCATCTGGAACTGAAAACGGGTTTGCTAACGGATGTAGACCTGTAAACACCATTCGATCAACCGATGCTCTTGAAGTAAAAGATATAGATGCGAAAGATTCAACAAAGAAGGAAAATTGTTTGAAGGATCCAGATGATAACAGAAAGTATGGCAACCACACTAGCTCATCAGCTCCGAGTGAAACCGTCACTACAAAAATCTCAAATTCTAATCCAACCACTAAGGAGTTTAAACTTAACCCTGGTGCAAAGATATTTTCTCCATCATTTCCTAATAAAAGATCAGCAACCCCTCAAGCACTGGTGACGGGTACAAATCTTGTATACAATCCCGACACTCATCCTAGTGGCCTGGTAGCCGGCCCACAGCCCGAAGTTGAAATCAGCCCATTTGCTCCCCGTTCCGTGCCCGTTAAGTTTGTTCCATATGCAGGCAATGATGTACACCATCCTCCTCCTCATATTGTTGGATATATGACTAACAGGAGTCAACCCGCCAGATACGGGTCATATCATCCTGTCCAAACAGCACCTACCTATGTCCAACCAAGCTCTCAGAATGTAATGGTTGGACGATTAGGGCCCGTTGTCTATGTTCATCCGGTTTCCCAAGTAAGATGTTGCTACAATTAG 897 43.59 MTRKGSCNSNVANEEVIRTLIIQSEDLVQVVAKKVTIPADGFAGHGTGDETGAAACSFPSNGISLTESNKTMTGKSNVGQPHTNQTRCSSGTENGFANGCRPVNTIRSTDALEVKDIDAKDSTKKENCLKDPDDNRKYGNHTSSSAPSETVTTKISNSNPTTKEFKLNPGAKIFSPSFPNKRSATPQALVTGTNLVYNPDTHPSGLVAGPQPEVEISPFAPRSVPVKFVPYAGNDVHHPPPHIVGYMTNRSQPARYGSYHPVQTAPTYVQPSSQNVMVGRLGPVVYVHPVSQVRCCYN 298
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu16g02471 298 PANTHER ATAXIN 2-RELATED 92 276 IPR045117 GO:0003723(InterPro)|GO:0003729(PANTHER)|GO:0010494(PANTHER)|GO:0034063(PANTHER)
Hetu16g02471 298 MobiDBLite consensus disorder prediction 123 164 - -
Hetu16g02471 298 MobiDBLite consensus disorder prediction 139 164 - -
Hetu16g02471 298 MobiDBLite consensus disorder prediction 123 138 - -
Hetu16g02471 298 MobiDBLite consensus disorder prediction 71 99 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu16g02471 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
282955 Hetu16g02471 Hetu18g02613
285366 Hetu18g02613 Hetu16g02471
409871 Hetu16g02471 Hetu31g00908
409872 Hetu16g02471 Hetu32g00965
409873 Hetu16g02471 Hetu33g01017
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3313379 Hetu Hetu16g02471 Hetu-Chr16:129295771 Hetu41g03386 Hetu-Chr41:158686258
3563229 Hetu Hetu16g02471 Hetu-Chr16:129295771 Hetu17g02325 Hetu-Chr17:120464847
3564625 Hetu Hetu16g02471 Hetu-Chr16:129295771 Hetu18g02613 Hetu-Chr18:127850673
3566003 Hetu Hetu16g02471 Hetu-Chr16:129295771 Hetu31g00908 Hetu-Chr31:40841874
3566110 Hetu Hetu16g02471 Hetu-Chr16:129295771 Hetu32g00965 Hetu-Chr32:44612856
3566198 Hetu Hetu16g02471 Hetu-Chr16:129295771 Hetu33g01017 Hetu-Chr33:43292406