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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu16g02531 ATGCCCACTGCAATCTTGCTTTTACCCTCTTCTTTCAATAATTCAATGGCTTCCTTTCACACATATCTCTACGTTTTCTTCTCATTATTCTCCACTTTACTCTCTATTTCCAAGGCTTTCAATTTGACCGTTGGCGGCAAAGACGGCTGGACTTTACACCCTTCTGAAGCATACGATCATTGGTCAGGCAGATTGAGGTTTAACGTCAACGACAATCTCCTATTCGGGCTGGGTTGCGTTTATTAG 246 42.68 MPTAILLLPSSFNNSMASFHTYLYVFFSLFSTLLSISKAFNLTVGGKDGWTLHPSEAYDHWSGRLRFNVNDNLLFGLGCVY 81
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu16g02531 81 ProSiteProfiles Phytocyanin domain profile. 40 81 IPR003245 GO:0009055(InterPro)
Hetu16g02531 81 SUPERFAMILY Cupredoxins 39 75 IPR008972 -
Hetu16g02531 81 Gene3D - 38 78 IPR008972 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu16g02531 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr16:133447243 Hetu7g01638 Hetu-Chr7:66636150 dispersed
Hetu Hetu-Chr16:133447243 Hetu31g00714 Hetu-Chr31:30897349 wgd
Hetu Hetu-Chr16:133447243 Hetu32g00771 Hetu-Chr32:33766007 wgd
Hetu Hetu-Chr16:133447243 Hetu33g00836 Hetu-Chr33:33683166 wgd
Hetu Hetu-Chr16:133447243 Hetu8g01489 Hetu-Chr8:62761668 wgd
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Gene Family Members

Select Gene Event_type S_start S_end Function Ath_gene Identity(%) E-value Score
Hetu4g02720 HSH 13 161 PhytocyaNIN gene family AT5G15350 42.484 6.93e-40 132.0
Hetu5g02641 HSH 13 161 PhytocyaNIN gene family AT5G15350 42.484 9.01e-40 131.0
Hetu5g02830 . 19 126 PhytocyaNIN gene family AT1G17800 32.456 9.22e-10 51.2
Hetu6g02921 HSH 13 164 PhytocyaNIN gene family AT5G15350 42.405 3.78e-40 132.0
Hetu7g00890 HSH 8 160 PhytocyaNIN gene family AT1G64640 54.037 3.22e-47 153.0
Hetu7g01111 . 3 62 PhytocyaNIN gene family AT4G12880 41.667 1.70e-07 43.5
Hetu7g01638 ACH,HSH,WGDA 11 196 PhytocyaNIN gene family AT5G53870 49.268 6.07e-52 172.0
Hetu8g00656 HSH 33 160 PhytocyaNIN gene family AT1G64640 60.0 1.55e-48 154.0
Hetu8g01489 ACH,HSH,WGDA 3 196 PhytocyaNIN gene family AT5G53870 49.765 2.70e-54 179.0
Hetu8g01491 ACH 3 196 PhytocyaNIN gene family AT5G53870 46.522 9.60e-53 175.0
Hetu9g00751 HSH 8 160 PhytocyaNIN gene family AT1G64640 54.037 1.79e-47 153.0
Hetu10g02345 ACH,HSH,WGDA 19 191 PhytocyaNIN gene family AT5G53870 44.974 9.53e-46 155.0
Hetu10g02424 ACH,HSH 9 178 PhytocyaNIN gene family AT3G20570 44.324 1.95e-47 153.0
Hetu11g02417 ACH,HSH,WGDA 3 199 PhytocyaNIN gene family AT5G53870 43.434 7.57e-47 158.0
Hetu11g02488 ACH,HSH 9 178 PhytocyaNIN gene family AT3G20570 45.161 1.81e-47 153.0
Hetu12g02239 ACH,HSH,WGDA 3 199 PhytocyaNIN gene family AT5G53870 43.434 3.39e-47 159.0
Hetu12g02318 ACH,HSH 9 178 PhytocyaNIN gene family AT3G20570 44.086 1.49e-45 148.0
Hetu13g00108 ACH,HSH 7 186 PhytocyaNIN gene family AT3G20570 42.778 1.23e-45 147.0
Hetu13g02102 HSH 7 126 PhytocyaNIN gene family AT3G18590 31.452 8.36e-11 55.5
Hetu14g00059 . 16 155 PhytocyaNIN gene family AT2G25060 28.082 2.42e-06 45.1
Hetu14g00269 ACH,HSH 7 188 PhytocyaNIN gene family AT3G20570 42.857 5.64e-46 148.0
Hetu14g02046 HSH 7 126 PhytocyaNIN gene family AT3G18590 31.452 8.36e-11 55.5
Hetu15g00155 ACH,HSH 7 188 PhytocyaNIN gene family AT3G20570 42.857 1.28e-46 150.0
Hetu15g02053 HSH 7 126 PhytocyaNIN gene family AT3G18590 31.452 9.07e-11 55.5
Hetu16g02344 HSH,WGDA 18 136 PhytocyaNIN gene family AT1G17800 40.496 7.03e-22 82.8
Hetu16g02531 . 9 62 PhytocyaNIN gene family AT4G28365 51.852 1.08e-11 55.8
Hetu16g03034 HSH,WGDA 9 168 PhytocyaNIN gene family AT5G15350 49.693 3.21e-54 167.0
Hetu17g02211 HSH,WGDA 18 136 PhytocyaNIN gene family AT1G17800 40.496 2.36e-21 81.6
Hetu17g02953 HSH,WGDA 9 168 PhytocyaNIN gene family AT5G15350 49.693 3.66e-54 167.0
Hetu17g02954 HSH,WGDA 60 170 PhytocyaNIN gene family AT5G15350 37.838 1.63e-22 85.9
Hetu18g00149 . 58 155 PhytocyaNIN gene family AT1G08500 45.918 2.42e-22 88.6
Hetu18g02502 HSH,WGDA 18 136 PhytocyaNIN gene family AT1G17800 40.496 1.05e-21 82.4
Hetu18g03211 HSH,WGDA 9 166 PhytocyaNIN gene family AT5G15350 37.441 1.63e-42 140.0
Hetu18g03213 HSH,WGDA 59 157 PhytocyaNIN gene family AT2G27035 44.66 8.56e-23 86.3
Hetu25g00495 HSH 8 176 PhytocyaNIN gene family AT1G48940 41.765 1.42e-46 149.0
Hetu25g01311 WGDA 10 168 PhytocyaNIN gene family AT5G15350 51.553 3.78e-55 170.0
Hetu25g01312 WGDA 3 155 PhytocyaNIN gene family AT2G27035 40.764 2.65e-39 129.0
Hetu26g00457 HSH 8 129 PhytocyaNIN gene family AT1G48940 51.639 2.04e-46 147.0
Hetu26g01468 WGDA 10 168 PhytocyaNIN gene family AT5G15350 44.565 2.53e-49 156.0
Hetu26g01469 WGDA 12 155 PhytocyaNIN gene family AT2G27035 40.69 1.20e-37 126.0
Hetu27g01604 WGDA 10 168 PhytocyaNIN gene family AT5G15350 51.553 1.72e-54 169.0
Hetu27g01605 WGDA 3 155 PhytocyaNIN gene family AT2G27035 40.764 2.65e-39 129.0
Hetu28g03186 . 58 127 PhytocyaNIN gene family AT5G57920 45.714 6.27e-21 81.6
Hetu28g03187 HSH,WGDA 19 155 PhytocyaNIN gene family AT5G57920 43.066 5.60e-38 127.0
Hetu28g03191 . 22 132 PhytocyaNIN gene family AT4G30590 54.054 1.10e-39 132.0
Hetu28g03195 HSH 22 132 PhytocyaNIN gene family AT4G30590 54.054 1.10e-39 132.0
Hetu29g03366 HSH,WGDA 42 127 PhytocyaNIN gene family AT5G57920 42.222 1.99e-22 86.3
Hetu29g03367 HSH,WGDA 22 152 PhytocyaNIN gene family AT4G30590 51.88 3.61e-39 130.0
Hetu30g02836 . 8 134 PhytocyaNIN gene family AT1G79800 40.157 1.50e-29 108.0
Hetu30g03338 ACH,HSH,WGDA 19 155 PhytocyaNIN gene family AT5G57920 43.066 1.08e-38 129.0
Hetu31g00714 ACH,HSH 1 196 PhytocyaNIN gene family AT4G27520 44.175 7.67e-49 169.0
Hetu31g00889 ACH,HSH 13 202 PhytocyaNIN gene family AT3G20570 42.347 8.85e-48 153.0
Hetu31g01388 . 16 84 PhytocyaNIN gene family AT1G17800 35.714 1.81e-07 44.7
Hetu31g01389 HSH,WGDA 17 134 PhytocyaNIN gene family AT1G17800 37.815 2.79e-23 86.3
Hetu31g01391 . 72 136 PhytocyaNIN gene family AT1G17800 42.424 1.48e-09 48.9
Hetu31g01394 HSH,WGDA 19 136 PhytocyaNIN gene family AT1G17800 38.136 6.62e-22 82.8
Hetu32g00771 ACH,HSH 10 196 PhytocyaNIN gene family AT4G27520 46.193 2.90e-49 170.0
Hetu32g00942 ACH,HSH 14 202 PhytocyaNIN gene family AT3G20570 43.077 7.04e-49 156.0
Hetu32g01429 HSH,WGDA 19 136 PhytocyaNIN gene family AT1G17800 39.496 6.73e-22 82.8
Hetu33g00836 ACH,HSH 10 196 PhytocyaNIN gene family AT4G27520 46.193 3.45e-49 170.0
Hetu33g00995 ACH,HSH 54 186 PhytocyaNIN gene family AT3G20570 41.045 3.19e-31 110.0
Hetu34g02421 HSH 6 199 PhytocyaNIN gene family AT4G28365 40.686 4.62e-49 156.0
Hetu35g02498 HSH 6 199 PhytocyaNIN gene family AT4G28365 40.686 4.62e-49 156.0
Hetu36g02345 HSH 6 199 PhytocyaNIN gene family AT4G28365 40.686 6.13e-48 154.0
Hetu37g03561 HSH 23 136 PhytocyaNIN gene family AT1G17800 40.0 1.83e-20 79.0
Hetu38g03183 HSH 19 136 PhytocyaNIN gene family AT1G17800 38.655 1.93e-21 81.6
Hetu38g03241 HSH 23 136 PhytocyaNIN gene family AT1G17800 40.0 1.83e-20 79.0
Hetu38g03291 HSH 19 136 PhytocyaNIN gene family AT1G17800 38.655 1.93e-21 81.6
Hetu40g03184 . 11 199 PhytocyaNIN gene family AT1G08500 56.186 1.88e-69 212.0
Hetu41g03235 . 9 201 PhytocyaNIN gene family AT1G08500 55.051 2.16e-70 213.0
Hetu42g03084 . 9 201 PhytocyaNIN gene family AT1G08500 55.556 6.31e-71 214.0
Hetu46g03866 HSH,WGDA 19 129 PhytocyaNIN gene family AT5G57920 53.153 4.43e-41 135.0
Hetu46g03942 . 9 108 PhytocyaNIN gene family AT4G28365 37.255 1.00e-15 67.4
Hetu46g03943 HSH 9 126 PhytocyaNIN gene family AT4G28365 36.667 1.42e-19 78.6
Hetu46g04016 HSH 27 130 PhytocyaNIN gene family AT3G20570 31.429 4.76e-14 63.9
Hetu47g00533 . 21 62 PhytocyaNIN gene family AT4G12880 51.163 3.06e-08 47.8
Hetu47g04082 HSH 9 126 PhytocyaNIN gene family AT4G28365 36.134 8.69e-18 73.6
Hetu47g04143 HSH 30 126 PhytocyaNIN gene family AT3G20570 32.673 1.45e-12 60.1
Hetu47g04144 HSH 27 130 PhytocyaNIN gene family AT3G20570 31.429 6.72e-14 63.5
Hetu48g03580 HSH,WGDA 19 129 PhytocyaNIN gene family AT5G57920 53.153 4.68e-41 135.0
Hetu48g03661 HSH 9 126 PhytocyaNIN gene family AT4G28365 35.833 1.36e-18 75.9
Hetu48g03753 HSH 30 126 PhytocyaNIN gene family AT3G20570 32.673 1.45e-12 60.1
Hetu49g00928 HSH 14 179 PhytocyaNIN gene family AT1G08500 42.012 6.98e-36 124.0
Hetu50g00711 HSH 14 179 PhytocyaNIN gene family AT1G08500 42.012 6.98e-36 124.0
Hetu51g01067 HSH 14 179 PhytocyaNIN gene family AT1G08500 41.667 5.64e-36 124.0