AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu17g02265 | ATGAAGCTCGTCAGGTCGTCCATCTTTCAAGAACAGTTGTTGTCGTCCGAAACAAAAAATTTTAGTGAGATTGTTGGCGAAGTGTTAACTCTCTGTGTTGATATTAGCATGAACACACACTTGAAGACGGTGAAGTTGACAATGAAAGGCAAAAATCCCGTAACCCTTGATCATCTGAGTGTGAGAGGCAATAACATTCGTTACTATATACTTCCTGACAGCTTAAATTTGGAGACTTTGCTAGTTGAGGAAACACCTAGAGTCAAACCCAAGAAGCCAACTGCAGAAAGTTCGGAACCAACAACAAAAGAGACCAAAAGTCACAAGTATATATAG | 336 | 39.88 | MKLVRSSIFQEQLLSSETKNFSEIVGEVLTLCVDISMNTHLKTVKLTMKGKNPVTLDHLSVRGNNIRYYILPDSLNLETLLVEETPRVKPKKPTAESSEPTTKETKSHKYI | 111 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu17g02265 | 111 | PANTHER | SMALL NUCLEAR RIBONUCLEOPROTEIN SM | 31 | 96 | IPR027141 | GO:0000243(PANTHER)|GO:0000387(PANTHER)|GO:0003723(PANTHER)|GO:0005682(PANTHER)|GO:0005685(PANTHER)|GO:0005686(PANTHER)|GO:0005687(PANTHER)|GO:0005689(PANTHER)|GO:0006396(InterPro)|GO:0034715(PANTHER)|GO:0034719(PANTHER)|GO:0071011(PANTHER)|GO:0071013(PANTHER)|GO:0097526(PANTHER) | |
| Hetu17g02265 | 111 | Pfam | LSM domain | 32 | 70 | IPR001163 | - | |
| Hetu17g02265 | 111 | SUPERFAMILY | Sm-like ribonucleoproteins | 31 | 92 | IPR010920 | - | |
| Hetu17g02265 | 111 | Gene3D | - | 8 | 86 | - | - | |
| Hetu17g02265 | 111 | MobiDBLite | consensus disorder prediction | 84 | 111 | - | - | |
| Hetu17g02265 | 111 | FunFam | Small nuclear ribonucleoprotein Sm D1 | 51 | 83 | - | - |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu17g02265 | K11087 | small nuclear ribonucleoprotein D1 |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 281991 | Hetu16g02381 | Hetu17g02265 | |
| 283915 | Hetu17g02265 | Hetu18g02543 | |
| 284730 | Hetu18g02543 | Hetu17g02265 | |
| 410486 | Hetu17g02265 | Hetu31g01104 | |
| 410487 | Hetu17g02265 | Hetu32g01149 | |
| 410488 | Hetu17g02265 | Hetu33g01215 |
| Select | Gene1 | Location1 | Gene2 | Location2 | Duplicated-type |
|---|---|---|---|---|---|
| Hetu | Hetu-Chr17:114883636 | Hetu30g00446 | Hetu-Chr30:24158957 | dispersed | |
| Hetu | Hetu-Chr16:122473787 | Hetu17g02265 | Hetu-Chr17:114883636 | wgd | |
| Hetu | Hetu-Chr17:114883636 | Hetu18g02543 | Hetu-Chr18:120900261 | wgd | |
| Hetu | Hetu-Chr17:114883636 | Hetu31g01104 | Hetu-Chr31:50960196 | wgd | |
| Hetu | Hetu-Chr17:114883636 | Hetu32g01149 | Hetu-Chr32:54751325 | wgd | |
| Hetu | Hetu-Chr17:114883636 | Hetu33g01215 | Hetu-Chr33:53698778 | wgd |