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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu17g02488 ATGCCAGCATCAATTTTACTCTTAAAAATATCATCCATAACAATCACACCTAACCATCATCTTCAACCGGTTTATTCCGTCATCGTCACCGGCGGAACAAACCACTGCTACCACCAGTCCACCTCCTCTCCAATTATGTGGAAATACACATGGATCCCTATAATATTAACAATAATATATCTACAAACTAGCTTCACGAAACCTGAGTCAACCATCCACTACTCGCCTACTGTTATGAAATCCACGTGTCCTTCACCGGACCCTACCCTCAACCACCGTCCGATCATCGGAATTGTTAGTCATCCCGGCGACGGTGCTTCCGGCAGACTCAGTAATGCCACTAATGCTTCCTATATTGCTGCTTCCTATGTCAAGTTTGTTGAGTCTGCTGGTGCTAGGGTTATTCCGCTCATTTACAACGAACCGATTACTAATCTTCAAGCTAAGCTCAGTTTGGTCAACGGAGTGCTTTTTACCGGTGGATGGTCTAAGAGTGGCCTCTATTTTGATGTTATTGAGGGAATTTTCAAGCAAGTCTTGAAGAAGAATGATGAAGGTGAACATTTCCCATTGCTTGCAATATGCTTAGGATTTGAACTCCTAACGATGATTATTAGCAAAAACAATAACATCCTTGAAGACTTTAGTGCATCAGATCAAGCTTCTACACTCCAATTCATGAGGAACATTAATCTTGAAGAAACATTATTTCAAAGATTTCCTCCTGAGTTGATTGCAAAGTTGAGCACAGAATGCCTTGTGATGCAAAACCATAAATATGGTATATCACCAGAAACATTTCAAGGTAATACAGAACTGTGCAGCTTCTTCAAGATCTTAACCACCAGTGCCGACCAAAACGGCAAGGTATATGTGTCAACGGTTCAATCAGAAAGCTATCCCGTGACTGCTGTCCAGTGGCACCCAGAGAAAAATGCTTTTGAGTGGGGCTCATCGGAAATTCCACATTCAGACGATGCAATCCAAGTGACTCAACATGTTGCCAACTTTTTCATAAGTGAGGCTAGAAAATCGCTCAACAGACCGCCTGCTGAACAAGTGCTAGCTAACCTTATCTACAATTACAGCCCCACTTATTGTGGGACCGCCGGGAAAGGATATGATGAGGTTTACATCTTCTCCGAGATGGAAACGATTGCACGACTTTGA 1170 42.56 MPASILLLKISSITITPNHHLQPVYSVIVTGGTNHCYHQSTSSPIMWKYTWIPIILTIIYLQTSFTKPESTIHYSPTVMKSTCPSPDPTLNHRPIIGIVSHPGDGASGRLSNATNASYIAASYVKFVESAGARVIPLIYNEPITNLQAKLSLVNGVLFTGGWSKSGLYFDVIEGIFKQVLKKNDEGEHFPLLAICLGFELLTMIISKNNNILEDFSASDQASTLQFMRNINLEETLFQRFPPELIAKLSTECLVMQNHKYGISPETFQGNTELCSFFKILTTSADQNGKVYVSTVQSESYPVTAVQWHPEKNAFEWGSSEIPHSDDAIQVTQHVANFFISEARKSLNRPPAEQVLANLIYNYSPTYCGTAGKGYDEVYIFSEMETIARL 389
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu17g02488 389 ProSiteProfiles Glutamine amidotransferase type 1 domain profile. 109 324 - -
Hetu17g02488 389 ProSiteProfiles Gamma-glutamyl hydrolase domain profile. 85 381 IPR015527 GO:0008242(InterPro)
Hetu17g02488 389 SUPERFAMILY Class I glutamine amidotransferase-like 94 379 IPR029062 -
Hetu17g02488 389 Pfam Peptidase C26 94 310 IPR011697 GO:0016787(InterPro)
Hetu17g02488 389 FunFam Folate gamma-glutamyl hydrolase 90 381 - -
Hetu17g02488 389 PANTHER PROTEASE FAMILY C26 GAMMA-GLUTAMYL HYDROLASE 73 381 IPR015527 GO:0005773(PANTHER)|GO:0008242(InterPro)|GO:0034722(PANTHER)|GO:0046900(PANTHER)
Hetu17g02488 389 Gene3D - 89 381 IPR029062 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu17g02488 K01307 gamma-glutamyl hydrolase [EC:3.4.19.9]
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Event-related genes

Select Gene_1 Gene_2 Event_name
282011 Hetu16g02604 Hetu17g02488
283973 Hetu17g02488 Hetu18g02761
284788 Hetu18g02761 Hetu17g02488
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr10:234438909 Hetu17g02488 Hetu-Chr17:130989033 transposed
Hetu Hetu-Chr16:138418015 Hetu17g02488 Hetu-Chr17:130989033 wgd
Hetu Hetu-Chr17:127163783 Hetu17g02488 Hetu-Chr17:130989033 wgd
Hetu Hetu-Chr17:130989033 Hetu18g02761 Hetu-Chr18:138875620 wgd