AGRP
Asteraceae Genomic Research Platform
Asteraceae Genomic Research Platform
| Select | Gene | Cds | Cds_length | GC_content | Pep | Pep_length |
|---|---|---|---|---|---|---|
| Hetu18g02664 | ATGTTTGTAACTTCAAGCAGGTGGTGGTTACCGGAGGACGCGAACAGAAAAAATAGTCGTCTGGTTGCTATGACAACAGCGCTCGTCGGATCATTAACTCCCTACAAAAAGAGGATTTACACAGTCACCAACAGGCTACCGGAAGCCGATCATCCCATTTACGCCGTCGTTTTCAACTTCATCAACTCTCCTTATTACGACTTCTTCGCCACTGTTGGTGGTAATCGCGTTACTGTATACAAATGCCTTGAAGGTGGCATGATTGATGTACTTCGGTCCTACATTGACGATGATGAAGATGAATCTTTCTACACTGTTTGTTGGGCTTCTGATGCCGGCGGAACACCACTGCTGGTAGCTGGAGGAATCAATGGTATAATTCGTGTCATTGATGCTTGCAATGAGAATATACACAAGAATTTGGTTGGTCACGGGAACTCGATAAATGAAGTTAGAACAAAAACACTAAACCCTTCTCTAGTACTTTCTGCAAGCAAAGACGAATCTGTTCGCTTGTGGAATGTACAAACTGGAATATGCATTTTGATATTTGCTGGTGCAGGTGGTCACCGCAATGAAGTGTTAAGTGTGGATTTCCATCCTTCAGATGTATATCGTCTTGCCAGTTGTGGTATGGATGGCACCGTAAAGATCTGGTCTATGAAAGGTACATTTCTTGCAGAGTTTTGGAAGCATGTTGAGAGGTCTTTTACTTGGGAGGGACTTCCTTCAGCGTTTCCTACAAAACGTGTGCAGTTCCCGGTTAGAACTGTTTCTATATTTATCTTTATTAATGTAGTTTACCTTTTTCTCAAACGGACATTTGTTCCTATTGTAAGTAGAACTCAATTTGTTCAGGTATTGATTGCTTCAATCCATACAAATTATGTTGACTGCAATAGGTGGCTTGGCGATTTCATACTATCTAAGGGTGTTGATAACGAGTTCATACTGTGGGAGCCAAAGATTAAAGAACAGTCTCCAGGAGAGGCCACGGTAGATATCCTTCAGAAATATCCGGTCCCTGATTGTGACATTTGGTTTATGAAGCTTTCCTGTGACTTTCATTACAAGGCAGCAGCTATAGGGAACAGGGAAGGGAAAATCTATGTATGGGATTTGCAGACCAGCCCGCCTTCTCTAATTGCAAGGTTATCTCATGCTCAATCCAAATTTCCCATCAGGCAAACTGCTATGTCGTTTGATGGAAGCACAATACTCGGCTGCTGTGAAGATGGCACCATCTGGCGGTGGGATACTGTGTAG | 1266 | 42.89 | MFVTSSRWWLPEDANRKNSRLVAMTTALVGSLTPYKKRIYTVTNRLPEADHPIYAVVFNFINSPYYDFFATVGGNRVTVYKCLEGGMIDVLRSYIDDDEDESFYTVCWASDAGGTPLLVAGGINGIIRVIDACNENIHKNLVGHGNSINEVRTKTLNPSLVLSASKDESVRLWNVQTGICILIFAGAGGHRNEVLSVDFHPSDVYRLASCGMDGTVKIWSMKGTFLAEFWKHVERSFTWEGLPSAFPTKRVQFPVRTVSIFIFINVVYLFLKRTFVPIVSRTQFVQVLIASIHTNYVDCNRWLGDFILSKGVDNEFILWEPKIKEQSPGEATVDILQKYPVPDCDIWFMKLSCDFHYKAAAIGNREGKIYVWDLQTSPPSLIARLSHAQSKFPIRQTAMSFDGSTILGCCEDGTIWRWDTV | 421 |
| Select | Seq ID | Length | Analysis | Description | Start | End | IPR | GO |
|---|---|---|---|---|---|---|---|---|
| Hetu18g02664 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 141 | 178 | - | - | |
| Hetu18g02664 | 421 | Gene3D | - | 36 | 421 | IPR015943 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | SMART | WD40-4 | 87 | 131 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | SMART | WD40-4 | 281 | 320 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | SMART | WD40-4 | 134 | 174 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | SMART | WD40-4 | 332 | 373 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | SMART | WD40-4 | 177 | 220 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | SMART | WD40-4 | 378 | 419 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | ProSitePatterns | Trp-Asp (WD) repeats signature. | 161 | 175 | IPR019775 | - | |
| Hetu18g02664 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats circular profile. | 187 | 222 | - | - | |
| Hetu18g02664 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 187 | 222 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | PRINTS | G protein beta WD-40 repeat signature | 207 | 221 | IPR020472 | - | |
| Hetu18g02664 | 421 | PRINTS | G protein beta WD-40 repeat signature | 161 | 175 | IPR020472 | - | |
| Hetu18g02664 | 421 | PRINTS | G protein beta WD-40 repeat signature | 360 | 374 | IPR020472 | - | |
| Hetu18g02664 | 421 | ProSiteProfiles | Trp-Asp (WD) repeats profile. | 141 | 183 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | PANTHER | POLYCOMB PROTEIN | 24 | 420 | IPR051243 | GO:0000122(PANTHER)|GO:0006342(PANTHER)|GO:0031491(PANTHER)|GO:0035098(PANTHER) | |
| Hetu18g02664 | 421 | SUPERFAMILY | WD40 repeat-like | 44 | 419 | IPR036322 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | Pfam | WD domain, G-beta repeat | 139 | 174 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | Pfam | WD domain, G-beta repeat | 189 | 220 | IPR001680 | GO:0005515(InterPro) | |
| Hetu18g02664 | 421 | Pfam | WD domain, G-beta repeat | 391 | 419 | IPR001680 | GO:0005515(InterPro) |
| Select | Query | KO | Definition | Second KO | KEGG Genes ID | GHOSTX Score |
|---|---|---|---|---|---|---|
| Hetu18g02664 | K11462 | polycomb protein EED |
| Select | Gene_1 | Gene_2 | Event_name |
|---|---|---|---|
| 283949 | Hetu17g02349 | Hetu18g02664 | |
| 284764 | Hetu18g02664 | Hetu17g02349 | |
| 411280 | Hetu18g02664 | Hetu31g00864 | |
| 411281 | Hetu18g02664 | Hetu32g00906 | |
| 411282 | Hetu18g02664 | Hetu33g00966 |
| Select | Gene1 | Location1 | Gene2 | Location2 | E-value | Duplicated-type |
|---|---|---|---|---|---|---|
| 3569337 | Hetu | Hetu17g02349 | Hetu-Chr17:122642790 | Hetu18g02664 | Hetu-Chr18:131871066 | |
| 3572802 | Hetu | Hetu18g02664 | Hetu-Chr18:131871066 | Hetu31g00864 | Hetu-Chr31:39349907 | |
| 3572907 | Hetu | Hetu18g02664 | Hetu-Chr18:131871066 | Hetu32g00906 | Hetu-Chr32:42663645 | |
| 3573029 | Hetu | Hetu18g02664 | Hetu-Chr18:131871066 | Hetu33g00966 | Hetu-Chr33:41778644 |