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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu18g02673 ATGCTAAACAGCCTCCCCTCTGACTTCAGGGTATTGCTGGCCATTCTTATAGCAAGCGACTGTAATCCTCGAGGACTTACAAAGCATCTGCCAATCCTGGCCTCGTCCAGGGAAGTGCCTGTCATCTTTGTGAAAGACAAGACAGGTGGATCGTTTAAGTTGGGTGAAATTGTGAATTTGAAGACGGCTATGGCAATTGGAGTTAAAGCTAGAGGAAATTCAGTTAACAAGATGATAAGTGAGATTCTTGGAGGTAATGATTGTGGGCCCGCGAATGAAACAAATGACGAGGTGTTCATACAGAATCCACAAGCTTTGTTAGAAGACTAG 330 44.24 MLNSLPSDFRVLLAILIASDCNPRGLTKHLPILASSREVPVIFVKDKTGGSFKLGEIVNLKTAMAIGVKARGNSVNKMISEILGGNDCGPANETNDEVFIQNPQALLED 109
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu18g02673 109 Pfam Ribosomal protein L7Ae-L30e-S12e-Gadd45 family 14 74 IPR004038 -
Hetu18g02673 109 PANTHER OS07G0636400 PROTEIN 11 87 - -
Hetu18g02673 109 Gene3D - 11 97 IPR029064 -
Hetu18g02673 109 SUPERFAMILY L30e-like 14 82 IPR029064 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu18g02673 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
282963 Hetu16g02512 Hetu18g02673
283952 Hetu17g02356 Hetu18g02673
284767 Hetu18g02673 Hetu17g02356
285374 Hetu18g02673 Hetu16g02512
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3564637 Hetu Hetu16g02512 Hetu-Chr16:131759007 Hetu18g02673 Hetu-Chr18:132339620
3569342 Hetu Hetu17g02356 Hetu-Chr17:123111346 Hetu18g02673 Hetu-Chr18:132339620
3572139 Hetu Hetu18g02655 Hetu-Chr18:130460859 Hetu18g02673 Hetu-Chr18:132339620