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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00104 ATGAAGAATAATAAATCAAACTCCATTTTGTCACTTGGTTTTCTTTTGTTTATGCTTATTTTCTCTCATCCATCATCAACTCATGCTCAAGAAGTTGAGGATCAAAGCGGATTTGATTATTTGAGAGGTAGCACGATGGGGCCGGATAGATGGGGTGTGATGAGGAATGATTGGTCATTGTGCAGCAATGGGACGATGCAGTCTCCCATTGATATGTCGAGTCGAAGGGTGGAGATGGTGGACCACCCTAAGAATTTATACAGAAACTATAAGCCTTGTAATGCAACCATGCTTAACAGAGGTCATGACATTATGGTTAAATGGATAGGAGATGCAGGATCAATTATCATCAATGACACTGAGTATGCTTTAAAACAAGCACATTGGCACTCACCTTCGGAGCATACCATAAATGGCATAAGATTTGACATGGAACTACATATGGTCCACCTCAGTATCGACAACAAAATAGCTGTCATTGCTGTACTTTATAGAATCGGCAGACCTAGCCATTTTCTTTCTAGGTTGGCTGTAAACATATCATCTATGATAGATCGAAAGGGCATGCGTGGACACAGTGGGATAGTAAATCCTAGAGAGATTCAAATGAGCAGTAGGATGTATTACCGATATATCGGTTCACTAACGGTCCCTCCTTGCACCGAGAAAGTTGTTTGGACCATTAGCAGAAGGATAAGAACAGTTTCAATACGTCAAGTTAAATTACTTCGGGAGGCTGTAAATGATTATGCAGAATATAATGCAAGACCAGTACAACCAGACAATCTACGAGACATTCTTCTTTATGCCCAGGCTCGAGAGAGGAAATAG 831 40.67 MKNNKSNSILSLGFLLFMLIFSHPSSTHAQEVEDQSGFDYLRGSTMGPDRWGVMRNDWSLCSNGTMQSPIDMSSRRVEMVDHPKNLYRNYKPCNATMLNRGHDIMVKWIGDAGSIIINDTEYALKQAHWHSPSEHTINGIRFDMELHMVHLSIDNKIAVIAVLYRIGRPSHFLSRLAVNISSMIDRKGMRGHSGIVNPREIQMSSRMYYRYIGSLTVPPCTEKVVWTISRRIRTVSIRQVKLLREAVNDYAEYNARPVQPDNLRDILLYAQARERK 276
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00104 276 SMART Carb-anhydrase-2a 40 270 IPR001148 -
Hetu1g00104 276 Pfam Eukaryotic-type carbonic anhydrase 47 267 IPR001148 -
Hetu1g00104 276 ProSiteProfiles Alpha-carbonic anhydrases profile. 36 270 IPR001148 -
Hetu1g00104 276 SUPERFAMILY Carbonic anhydrase 38 266 IPR036398 -
Hetu1g00104 276 CDD alpha-CA-prokaryotic-like 47 268 IPR041891 -
Hetu1g00104 276 ProSitePatterns Alpha-carbonic anhydrases signature. 133 149 IPR018338 GO:0004089(InterPro)|GO:0008270(InterPro)
Hetu1g00104 276 Gene3D Alpha carbonic anhydrase 35 276 IPR036398 -
Hetu1g00104 276 PANTHER CARBONIC ANHYDRASE 22 262 IPR023561 GO:0004089(InterPro)|GO:0006730(PANTHER)|GO:0008270(InterPro)|GO:0016836(PANTHER)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00104 K01674 carbonic anhydrase [EC:4.2.1.1]
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3323029 Hetu Hetu1g00104 Hetu-Chr1:3999778 Hetu31g03433 Hetu-Chr31:194354211
3528721 Hetu Hetu1g00104 Hetu-Chr1:3999778 Hetu2g00165 Hetu-Chr2:4850422
3530521 Hetu Hetu1g00104 Hetu-Chr1:3999778 Hetu3g00098 Hetu-Chr3:3862545