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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00172 ATGGGATTCTTGGTGGTGGCAAATAGCGTAGCATGTTCATACTCAATTGCATCTATTGTACTATCGATAAAGAAGAAGATCCGAACTTATTTGGCATTTCTCATGTCTGACTTGATCATGATGGCATTGTTGTTCTCTGCCAATGGAGCCGCCACTGCGGTGGGCATGATCGGCCTCAATGGCAACTCTCATGCGCAATGGCATAAGGTGTGCTATATTTTTAGAAGGTATTGCCACCAGGGTGCAGCCTCTGTAACCATGTCCTTCCTTGGCTCATTTGCGTTTTTATGGCTTGTGGTTTTTGCAATTCTAAACCTCCATAAAAAATCTACTTGA 336 43.45 MGFLVVANSVACSYSIASIVLSIKKKIRTYLAFLMSDLIMMALLFSANGAATAVGMIGLNGNSHAQWHKVCYIFRRYCHQGAASVTMSFLGSFAFLWLVVFAILNLHKKST 111
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00172 111 NCBIfam plant integral membrane protein TIGR01569 3 105 IPR006459 -
Hetu1g00172 111 PANTHER CASP-LIKE PROTEIN 1U1 3 107 IPR044173 -
Hetu1g00172 111 Pfam Casparian strip membrane protein domain 3 93 IPR006702 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00172 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
266792 Hetu1g00172 Hetu2g00215
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:6989716 Hetu2g00215 Hetu-Chr2:7355922 dispersed
Hetu Hetu-Chr1:6932707 Hetu1g00172 Hetu-Chr1:6989716 proximal