AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00204 ATGGCGACTCCTGATGTTTTCTCATCCTCACCTCTATTTGATCTTACCAAAGGTGATACTAAATCCGGAGGATTTGCTCTGGAGAAGAAAATTGAATATCTTGAGAGCTTGAACGACAGAGTTAGCAACAGGAGGGCACGTAGATGGATTAATGATCGTATACTGTTGGAGCTTGTACCTCGTTTGACTGGAGATGAAATTAGAGGCCTATTTGCTCCACCACCTTGGGGTGAGGAGGCACGACCGTCACCATTTAGCATGACAAATGTCGGGGAGTGGGACAAATTTAGGAACATAGACATGGATAAAGAGGCTGGTGTGATAGAGGCCCTTAAAGGTTCCTCATCAAAGAAAAAAAGTCATGTGGATGCTGATAAGATAGCTGCGTTGACCGCTTGGCACAGGGTTGACCACAAAACTAGAGATGCATTTCGTAGAAGCTTCCTTCCGGAACTTGTTGATGGTTACGAGGAGAACGTACGGGCCTTTGTTTCAGAGGCAGGTGGCGAGGAGGTTCTTATACTACGTGTCCAAGACCCGTTCCATAGGTTGTTACTTCATGGTGTTTGTGAGTATACACACACAGGCACACACACAGCAAAAACAAACAGGAAGTTGGCCAGAATGACGAAAAAGCTAGTGAAATACTCCGTTGTGGATGCATTTACAGACACGCCGTTTAAAGGAAACCCAGCGGCTGTGTGTTTGTTAGATGACACTGAGAAAGATGATAAGTGGTTGCAATCAGTTGCAGCTGAATTTAACATCTCCGAGACTTGTTACTTGACTCCGGTTGCCGGTTCCAGATTTAATCTCAGATGGTTCACACCTGTAGCTGAGGTGGAGCTTTGTGGTCATGCAACTTTAGCAGCCTCCCACTTTCTTTTTAACTCTGGCTTGGTGAATTCCAACACAATTGAATTCTCAACACTTTCTGGAATTTTAACTGCCAAAAGAATCCCGGCTAACAAAATCAACGGCTCATCAAATGGGGAATCAGAAGATAGTTTCTACATAGAGTTGGATTTCCCTGTTGTGCCGGTTTCAGATTACAATGATCTTGAGGTTTCTGCAATATCGGAAATACTAAACGGTGTTTCCATTGTTGATGTAAAGACAAACACACTAGATGATATCTATGTGGAGCTTTCATCAGCGAAAGAACTGCTGGAGCTCAAGCCACAAATTCATAAGATTAAAGCAGCCCCGGGTAGAGGGATAGTAATTACAGCGCGTGCGCCTAACGGGTCAGGGTTTGACTTTTATAGTCGCTTCTTCTGCCCGAAATACGGAGTTGACGAGGATCCTGTTTGTGGGAGTGCACATTGCGCGTTAGCAGCCTATTGGCATGAGAAGTTGGGGAAATGCGATTTTGTTGCATATCAGGCATCACCTAGAAGCGGCGTATTACATGTCCATCTCGATAAGGAGAATCAACGAGTACTTCTTCGAGGTAAAGCCACCACAGTCATGGAAGGATCTCTTTTGGTCTAA 1494 44.65 MATPDVFSSSPLFDLTKGDTKSGGFALEKKIEYLESLNDRVSNRRARRWINDRILLELVPRLTGDEIRGLFAPPPWGEEARPSPFSMTNVGEWDKFRNIDMDKEAGVIEALKGSSSKKKSHVDADKIAALTAWHRVDHKTRDAFRRSFLPELVDGYEENVRAFVSEAGGEEVLILRVQDPFHRLLLHGVCEYTHTGTHTAKTNRKLARMTKKLVKYSVVDAFTDTPFKGNPAAVCLLDDTEKDDKWLQSVAAEFNISETCYLTPVAGSRFNLRWFTPVAEVELCGHATLAASHFLFNSGLVNSNTIEFSTLSGILTAKRIPANKINGSSNGESEDSFYIELDFPVVPVSDYNDLEVSAISEILNGVSIVDVKTNTLDDIYVELSSAKELLELKPQIHKIKAAPGRGIVITARAPNGSGFDFYSRFFCPKYGVDEDPVCGSAHCALAAYWHEKLGKCDFVAYQASPRSGVLHVHLDKENQRVLLRGKATTVMEGSLLV 497
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00204 497 SUPERFAMILY R3H domain 133 203 IPR036867 GO:0003676(InterPro)
Hetu1g00204 497 SUPERFAMILY Diaminopimelate epimerase-like 215 496 - -
Hetu1g00204 497 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 218 493 - -
Hetu1g00204 497 NCBIfam PhzF family phenazine biosynthesis isomerase 216 495 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Hetu1g00204 497 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 214 497 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Hetu1g00204 497 Pfam Phenazine biosynthesis-like protein 219 493 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Hetu1g00204 497 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 345 485 - -
Hetu1g00204 497 Pfam R3H-associated N-terminal domain 28 146 IPR025952 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00204 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Event-related genes

Select Gene_1 Gene_2 Event_name
266804 Hetu1g00204 Hetu2g00244
411778 Hetu1g00204 Hetu31g02255
411779 Hetu1g00204 Hetu32g02280
411780 Hetu1g00204 Hetu33g02212
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:8120520 Hetu2g00244 Hetu-Chr2:8738825 dispersed
Hetu Hetu-Chr1:8115623 Hetu1g00204 Hetu-Chr1:8120520 tandem
Hetu Hetu-Chr1:8120520 Hetu31g02255 Hetu-Chr31:131500293 wgd
Hetu Hetu-Chr1:8120520 Hetu32g02280 Hetu-Chr32:133464561 wgd
Hetu Hetu-Chr1:8120520 Hetu33g02211 Hetu-Chr33:125368851 wgd