AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00222 ATGGATTTCTTCAGATCCATATTATCAGATGATCCAGAACCTGAATCTCCACACAATCACTCACAATCCGATTCAAATCCGATCCAAAATCACTCACCAAATCATCCAGAAACCGAAGCTGATGAAGAAGACGAAGATTCCACTTCAAATCTCAATTCATCCGACGACGGAAGCGGTGGAGCTAGCAGCGGTGGTGGCGGTGGCGGTTTATGGAGCTTAGGAGATCTAGTGAAAACGTTAACTACGAAATCGGAGTCAGTTTTCGAAACCTACCGGCGAGATCTGCAGGAATTCGGTACTGGATTGCGGAAGGAATCGGATCTGTTCCGTGAAGTTGCGAGCCGTGCGGTGAAGGAGTTACCGGCGTCGATCGACGTCGGAACGTCGGCGATTGACGGAGTGTTGAAATCAACGGCGGAGATTATCGCACAAGGTAAGGAAGTTTTACTTGCGTCTTCTGATGTTGATGAATCTGATAGTTCTGATAGGTATAATAATAGTGAACGTAGTGGTGTGGATTTGAATAATTCGGTTAGGTATAGTCGGTTTGATACTCAATTGAATGCTATTAGGAGTGATGTGAGAGTGTTTGTTGAGGATCCTGAGGATGTAGAGGATTATAATAAGTGGAAGTTAGGGTTTGTGGTTGGGGATAAGAAGGATGAGATTGAGAAATTGATTGGAGAGAATGGCGGTTTGGAGGAAGTTTATGCGAAACTTGTGCCGCATGAGGTTGATGATGGAACGTTTTGGTTTAGGTATTTTTATAAGGTGTATAAGCTTAAATTGCAAGAAGAAATGAGAGCTAAGCTTGTGAAGCGATCGTTGTCGGTTGACGATGAAGAGGAATTGAGTTGGGATGTTGATGACGATGATGACGAAGAAGAAGAAGAAGAAGAACAGCAACATCGTAAATTAGAACCAGCTGATTCGGAAGACGGTAGAAAGAAACAGAGCGCTGATGACAAAATCGAAACTCAAAGTTCTAAGATTGTTGATGAAGATAAGGAGATGATAACCAATGTGGTTAGTGTTGATAAGAACAGTTTAGAGGAACCGAAACTCACTAGTGAAATTAAAACTCATGTTGAGGAAGCTGAGTCGGTGCCAAAATCTGGTGAAACGGTTGATGTCAAACCGGATTCGGGTGAAGCGAAAAATAGTAATGTCACGGTTAAATCAAGCGAGCCTTCGTTTCAGGAGGATGAGGATCTCGAGTGGGATGAGATCGAAGATCTTGGGAAAACTGATGACAAGAATGTAATTCATGGTGACACAACAACAAACAAAGCCGATCTGCGCAAGCGATTGAGTACTGTTGCGGATGAGGATGAGGATTTGAGTTGGGATATTGAAGACGATGACGAGCCTGTAAAGTCAGGTAATAAGTGA 1392 43.1 MDFFRSILSDDPEPESPHNHSQSDSNPIQNHSPNHPETEADEEDEDSTSNLNSSDDGSGGASSGGGGGGLWSLGDLVKTLTTKSESVFETYRRDLQEFGTGLRKESDLFREVASRAVKELPASIDVGTSAIDGVLKSTAEIIAQGKEVLLASSDVDESDSSDRYNNSERSGVDLNNSVRYSRFDTQLNAIRSDVRVFVEDPEDVEDYNKWKLGFVVGDKKDEIEKLIGENGGLEEVYAKLVPHEVDDGTFWFRYFYKVYKLKLQEEMRAKLVKRSLSVDDEEELSWDVDDDDDEEEEEEEQQHRKLEPADSEDGRKKQSADDKIETQSSKIVDEDKEMITNVVSVDKNSLEEPKLTSEIKTHVEEAESVPKSGETVDVKPDSGEAKNSNVTVKSSEPSFQEDEDLEWDEIEDLGKTDDKNVIHGDTTTNKADLRKRLSTVADEDEDLSWDIEDDDEPVKSGNK 463
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00222 463 MobiDBLite consensus disorder prediction 351 381 - -
Hetu1g00222 463 MobiDBLite consensus disorder prediction 282 403 - -
Hetu1g00222 463 SUPERFAMILY BSD domain-like 179 268 IPR035925 -
Hetu1g00222 463 MobiDBLite consensus disorder prediction 1 73 - -
Hetu1g00222 463 SMART wurzfinal6 210 262 IPR005607 -
Hetu1g00222 463 MobiDBLite consensus disorder prediction 19 34 - -
Hetu1g00222 463 Pfam BSD domain 210 266 IPR005607 -
Hetu1g00222 463 Gene3D BSD domain 173 273 IPR035925 -
Hetu1g00222 463 PANTHER SYNAPSE-ASSOCIATED PROTEIN 30 450 IPR051494 GO:0005737(PANTHER)
Hetu1g00222 463 MobiDBLite consensus disorder prediction 439 463 - -
Hetu1g00222 463 MobiDBLite consensus disorder prediction 1 18 - -
Hetu1g00222 463 MobiDBLite consensus disorder prediction 282 300 - -
Hetu1g00222 463 ProSiteProfiles BSD domain profile. 210 262 IPR005607 -
Hetu1g00222 463 MobiDBLite consensus disorder prediction 382 396 - -
Hetu1g00222 463 MobiDBLite consensus disorder prediction 301 341 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00222 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:8629380 Hetu43g02703 Hetu-Chr43:162091640 dispersed
Hetu Hetu-Chr1:8629380 Hetu3g00213 Hetu-Chr3:8869013 wgd
Hetu Hetu-Chr1:8629380 Hetu44g02680 Hetu-Chr44:142206014 wgd