AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00283 ATGGTGTTGTATACCGAATCTTTATCGACACCACCACAGGCTACACGGGCTACTTGTTTTGACGACGGAAGCTACACAGTGGAAAAGAAGACCATACCGAAATCATCGAATTCTGATACACCAAACCCGCCTTTGTACATTGTTTACCCTACCGAAAAAGGGACTTATCCCGTTATACTCTTTCTCCATGGCTTTTCGATCCCTAATACATGTTATTGCGACCTCTTCGAGTTTATTGCCTCTCATGGTTACATTATCGTCGCTCCTGGTCAGACTTTGGTATTATACTTTATATATTTTGAGCTCTTGAAAGGTCTATGTGCATTTTCTGCTGTTGATGACGTGGACAATGCAGCTGAAGCAGCCAACTGGATAAACAAAAACCAAGGCGAAAACCTTCGACTTGTACTCCCAAATGATGTATCACCAGATCTTGAAAATGTAGCACTAGCCGGTCATAGTAAAGGAGGAAAAGCAGCATTTGCACTAGCACTAGGCCATGCTAATACGAGCCTTAAATTCAAGGCTCTTATCGGTTTAGATCCTGTTGCAGGCCGAGATACATCCAACAGGCTCGAACCCAAGATCTTAAACTACATACCCCAAAATTTTAAAATATCCATGCCTATAGCCCTAATTGGAACAGGCTTGGGTGATGATGGGTGTTGCGGGTTGTCGGGTATGTTTGTATGCAAGACTGGGAAGGGTTCGTATGCTGATATGAGAAGAGCTTGCGGAGGCATTTTTGTTGCCTTTCTCAAGACTTATATGTTTGATGATGCCGAAGATCTCACCACTATTGTTGATTCACCCGGTACATTTGCTCCAATTAAGCTCGATCCAGTTTTATGGCTTCGATCATGA 864 43.06 MVLYTESLSTPPQATRATCFDDGSYTVEKKTIPKSSNSDTPNPPLYIVYPTEKGTYPVILFLHGFSIPNTCYCDLFEFIASHGYIIVAPGQTLVLYFIYFELLKGLCAFSAVDDVDNAAEAANWINKNQGENLRLVLPNDVSPDLENVALAGHSKGGKAAFALALGHANTSLKFKALIGLDPVAGRDTSNRLEPKILNYIPQNFKISMPIALIGTGLGDDGCCGLSGMFVCKTGKGSYADMRRACGGIFVAFLKTYMFDDAEDLTTIVDSPGTFAPIKLDPVLWLRS 287
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00283 287 SUPERFAMILY alpha-beta-Hydrolases 11 185 IPR029058 -
Hetu1g00283 287 Pfam Chlorophyllase 17 219 IPR017395 -
Hetu1g00283 287 Pfam Chlorophyllase 224 280 IPR017395 -
Hetu1g00283 287 Gene3D alpha-beta hydrolase 7 271 IPR029058 -
Hetu1g00283 287 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 227 283 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00283 K08099 chlorophyllase [EC:3.1.1.14]
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Event-related genes

Select Gene_1 Gene_2 Event_name
266823 Hetu1g00283 Hetu2g00278
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:10775181 Hetu3g00267 Hetu-Chr3:10903808 dispersed
Hetu Hetu-Chr1:10775181 Hetu1g00284 Hetu-Chr1:10813574 tandem
Hetu Hetu-Chr1:10775181 Hetu2g00278 Hetu-Chr2:9835929 wgd
Hetu Hetu-Chr1:10775181 Hetu3g00264 Hetu-Chr3:10787996 wgd