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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00377 ATGCTGAAAGCACAATACGTAACTCAATGTACAACCTATACTCTATATAACCCCATAGGCTCCATGTTCTTCAATGCACAATCAAGAATGTCATCATCAGGCTGTAAAGGAAAGGATTCATGGCCCGAGCTTGTTGGGGCAAAAGGAGAAGCGGCAGCGGCTACAATTGAGAAAGAGAATCCACTGGTTAATGCTATCGTGATATTGGAAGGAACCCCGACCCCTAGGGACTTCAGGTGCGACCGTGTGTGGGTGTGGGTGAATGATAAGGGAGTGGTGACTCGAACGCCTATCATTACTTGA 303 46.86 MLKAQYVTQCTTYTLYNPIGSMFFNAQSRMSSSGCKGKDSWPELVGAKGEAAAATIEKENPLVNAIVILEGTPTPRDFRCDRVWVWVNDKGVVTRTPIIT 100
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00377 100 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 31 99 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00377 100 ProSitePatterns Potato inhibitor I family signature. 41 52 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00377 100 PRINTS Potato inhibitor I signature 77 87 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00377 100 PRINTS Potato inhibitor I signature 65 76 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00377 100 PRINTS Potato inhibitor I signature 40 53 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00377 100 Gene3D Trypsin Inhibitor V, subunit A 24 99 - -
Hetu1g00377 100 Pfam Potato inhibitor I family 38 99 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00377 100 SUPERFAMILY CI-2 family of serine protease inhibitors 34 99 IPR036354 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00377 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:16786659 Hetu1g00377 Hetu-Chr1:16926615 dispersed
Hetu Hetu-Chr1:16926615 Hetu3g00334 Hetu-Chr3:13985609 dispersed
Hetu Hetu-Chr1:16909706 Hetu1g00377 Hetu-Chr1:16926615 tandem
Hetu Hetu-Chr1:16926615 Hetu1g00378 Hetu-Chr1:16946394 tandem