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AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g00390 ATGGCATCCATCTCCGCTCCCATTTCTACCTCTTCACCATCCTTCCCTCGGCTCCAAAAGCCTACGATCACCACCATCGGTTCTCCATTTCTCCGATTGCCATCGATAAGCAAGGCAGGGAAAGTTAGATGTTCCATCGAAGATAAGCCTCTTGTCAAACCCATCGATGATGCACCACCAACTCCTGAAGATGACTTGACTCCACTAGCACCCTGTCCAGATGAGGTGACTCCACCATCACCCTGTCCAGGAAAGAACTCATGGCCGGAGCTTGTAGGGAAACCTGGAGTAGTGGCAGCATCTATAATTGAGAAAGAGAATCCACTGGTTAATGCTATCGTGCTATTGGAAGGAACTTTCATCACTATGGATTTTCGGTGCGACCGTGTACGGGTGTGGGTGAACACTGACGGGGTGGTGATTGAAACACCTGTCATCACATGA 444 49.55 MASISAPISTSSPSFPRLQKPTITTIGSPFLRLPSISKAGKVRCSIEDKPLVKPIDDAPPTPEDDLTPLAPCPDEVTPPSPCPGKNSWPELVGKPGVVAASIIEKENPLVNAIVLLEGTFITMDFRCDRVRVWVNTDGVVIETPVIT 147
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g00390 147 Gene3D Trypsin Inhibitor V, subunit A 79 147 - -
Hetu1g00390 147 MobiDBLite consensus disorder prediction 1 21 - -
Hetu1g00390 147 PRINTS Potato inhibitor I signature 124 134 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00390 147 PRINTS Potato inhibitor I signature 112 123 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00390 147 PRINTS Potato inhibitor I signature 87 100 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00390 147 MobiDBLite consensus disorder prediction 51 87 - -
Hetu1g00390 147 PANTHER PROTEIN, PUTATIVE, EXPRESSED-RELATED 82 146 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00390 147 MobiDBLite consensus disorder prediction 64 85 - -
Hetu1g00390 147 SUPERFAMILY CI-2 family of serine protease inhibitors 81 146 IPR036354 -
Hetu1g00390 147 Pfam Potato inhibitor I family 85 146 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
Hetu1g00390 147 ProSitePatterns Potato inhibitor I family signature. 88 99 IPR000864 GO:0004867(InterPro)|GO:0009611(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g00390 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr1:19001383 Hetu2g00333 Hetu-Chr2:13517624 dispersed
Hetu Hetu-Chr1:19001383 Hetu1g00391 Hetu-Chr1:19152017 tandem