AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu1g01742 ATGGATCAACAGCAGCAGCAGCATATACTCTACGATGAAGTGGTAGTCAACGGCAAGGAGACGGCATTCACTTTGTCCCCCGACGGCATTCTCCGGTGGCATGACCCCTCCAACGTCCTCCGCTGCCTCTCCGTCGACAGACAAGTTCTCGGAGTATCAATTGCTAAACAGCAGATCCTGATTATTAGGTCATTTGTTGAGACTGACGGATCTTGCGTTTCAAGCTGCGCTGGAGGTTTGGTACGGAAGACCTTCGTGTTTCAGGCTTCGTCGGATGATTCAGCACGTAATATGTGCGACAAGATTCAGGGATACATCGATTCACTAGGCAGGCCAAAGAAGCTGTTTTTATTTGTTAACCCATTTGGAGGGAGGAAATCTGCTTCCAAGGTTTTTACCGATGATGTTAAACCTATACTCGAGGATGCTAATATAGAGTATACTTTACAAGAAACTAAATATCAACTTCATGCCAAGGAAGTTGCCCATGATTTGGATCTTACAAAGTATGATGGCATTCTTTGTGTTAGCGGAGATGGGATTTTAGTTGAGGTTGTTAATGGATTGCTTGAAAGAAAAGACTGGCAAGTCGCGCTTAAGATACCTATTGGAGTTATACCTGCAGGTACTGGAAATGGAATGATAAAATCTCTTCTCGATTCAGCTGGTCAACCATGTACAGCTGCTTATGCTATGCTTGCTGTCATTCAAGGGCATAAACGCTCTCTGGATGTAGCCACAATCTGGCAAGGGCAGTCTAGATTTTTCAGTGTCTTGATGCTTGCATGGGAATGCTTATTCTATGTCATGTTTTTTTTCTTTTCTAAAGGACTGATAGCTGACATAGATATCGAGTCTGAGCAGTATCGGTGGATGGGAAGTGCTCGAATGGATTTATATGGTCTACAACGAATTCTAAGTCTGCGGAAATATAACGGCTGTATTTCTTTTGTACCTGCTCCCGGATTTGAAGATGCAGGAGAACCAACCAGTGCTGCTGTTGAACCTCTTACAACTCAGCACCATGGTTACCAGGGCCCTAAGCTTGATTTGGGGACTTTAAGTTGGAGAAAACTTAATGGTCCGTTTATTGGTATTTGGCTTCAGAATGTTGCTTGGGGTTCTGAAAACGCCATGGCCGCACCTAATGCTAAGGTTCTCTTCTTTCTAAAGTAA 1176 43.88 MDQQQQQHILYDEVVVNGKETAFTLSPDGILRWHDPSNVLRCLSVDRQVLGVSIAKQQILIIRSFVETDGSCVSSCAGGLVRKTFVFQASSDDSARNMCDKIQGYIDSLGRPKKLFLFVNPFGGRKSASKVFTDDVKPILEDANIEYTLQETKYQLHAKEVAHDLDLTKYDGILCVSGDGILVEVVNGLLERKDWQVALKIPIGVIPAGTGNGMIKSLLDSAGQPCTAAYAMLAVIQGHKRSLDVATIWQGQSRFFSVLMLAWECLFYVMFFFFSKGLIADIDIESEQYRWMGSARMDLYGLQRILSLRKYNGCISFVPAPGFEDAGEPTSAAVEPLTTQHHGYQGPKLDLGTLSWRKLNGPFIGIWLQNVAWGSENAMAAPNAKVLFFLK 391
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu1g01742 391 FunFam Sphingosine kinase 2 98 243 - -
Hetu1g01742 391 Pfam Diacylglycerol kinase catalytic domain 114 247 IPR001206 GO:0016301(InterPro)
Hetu1g01742 391 SUPERFAMILY NAD kinase-diacylglycerol kinase-like 111 385 IPR016064 -
Hetu1g01742 391 Gene3D - 93 242 IPR017438 -
Hetu1g01742 391 Gene3D - 267 387 - -
Hetu1g01742 391 PANTHER SPHINGOSINE KINASE 80 385 IPR050187 GO:0001727(PANTHER)|GO:0005737(PANTHER)|GO:0006665(PANTHER)|GO:0016020(PANTHER)|GO:0016310(PANTHER)|GO:0043231(PANTHER)|GO:0046512(PANTHER)
Hetu1g01742 391 SMART dagk-c4a-7 114 249 IPR001206 GO:0016301(InterPro)
Hetu1g01742 391 ProSiteProfiles DAG-kinase catalytic (DAGKc) domain profile. 110 252 IPR001206 GO:0016301(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu1g01742 K04718 sphingosine kinase [EC:2.7.1.91]
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Event-related genes

Select Gene_1 Gene_2 Event_name
267406 Hetu1g01742 Hetu3g01583
269112 Hetu3g01583 Hetu1g01742
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr11:3011517 Hetu1g01742 Hetu-Chr1:98411572 dispersed
Hetu Hetu-Chr1:98411572 Hetu49g01583 Hetu-Chr49:69217876 dispersed
Hetu Hetu-Chr1:98411572 Hetu2g01551 Hetu-Chr2:88794729 transposed