AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00001 ATGGAACCACTTGCCAATGACAGGTCGGGTTTGAATGGAACTGAAGAAGAATTTAATGCTGCTAAAGCTGAAGAGCAGGCTGCGCGGTTAGCAAGCGAACTCATGATGAAAGAAAGGGAAACGCTACAAGTCTTGAAAGAACTCGAAGCCACAAAAACCACTTTTGAAGAGTTAAAACTCAAACTACTGAAAGAATCTGCTACAGTCAACGATCACGTACCAAGAGAGGGAAATGACAAGAATACCCTTGATCCCCAATCAGCTGGTGACAACTTGATGTGCCCTTCTTCATCTCCAGGTTTCATCTTGATGGAATTGAAGCAGGCGAAACTCAACTTAACAAGAACAACAAGTGATCTTGCTGACATCAGATCGACTGTTGAAACGTATAACAAATTGATCGAGAAAGAAAGATTGGAACTTGAGAAAACCCGTCAACGATTATCTTCAAATTGTTCAAAAATTTCGTATTTCAAAGAAGACATTGACTTTCCGAGGGAGATCCATAGGCTGACTTCTGAAACAGAGGAGTTCAAAAGGGTTGGGGAGGTAGCAAAATCACAAGTTTTAAAAGCAATGGATCAAATCAAACAAACAAAAAGCAATATAAAAACAGCCGAAATTCGTCTTCTTGCTGCTAGAAAGTTGAAGGAAGCTGCTAGAGCAAGTGAAGCGCTTGCGCGATCAGAAATAAAGTCAATGTCAAAAAGTCAAACTTTATCCGAACACGAAGGGGTCACTCTTTCGCTTGACGAATACTCATGTTTAAAACAGAAAGCTCGAGAGGCCGATGAGGCTTTAGTTAGAAAAGTCAACGAATCAGTGGTCAAAGTCAAAGAATCCGAGTTGTCAAAATCAGAGATGTTGACTAGGGTAGAGAAAGCAGCAGAAGAAGCGAAGAATAGTAAGACGGTTCTAGAAGAAGCTTTGAGTAAAGTAGAAACCGCTAATAAGGAGAAACTAAAAGCTGAAGAAGCACTAAGGAAATGGCGATCGGATCATGGTCAAAGAAGAAAGTCAACTGTTCAAAACTTGACCAAGTTCAAGAACTCTTCATGCAGGACCAACAGCACTCGTTTGCTGGACGTAAACGGGGTTCATTTGGGAACTAACACGCCTGGCCCGGTTTTGAGACCAACGATGTCAATCGGGCAGATTTTGAACCGGAAGTTGCTTTTGACAGGAGTATTCCAGCAAAAGCAATACGAACAGGAAGGTTTCTTTGGCACAAATGTTGGGTAA 1242 41.55 MEPLANDRSGLNGTEEEFNAAKAEEQAARLASELMMKERETLQVLKELEATKTTFEELKLKLLKESATVNDHVPREGNDKNTLDPQSAGDNLMCPSSSPGFILMELKQAKLNLTRTTSDLADIRSTVETYNKLIEKERLELEKTRQRLSSNCSKISYFKEDIDFPREIHRLTSETEEFKRVGEVAKSQVLKAMDQIKQTKSNIKTAEIRLLAARKLKEAARASEALARSEIKSMSKSQTLSEHEGVTLSLDEYSCLKQKAREADEALVRKVNESVVKVKESELSKSEMLTRVEKAAEEAKNSKTVLEEALSKVETANKEKLKAEEALRKWRSDHGQRRKSTVQNLTKFKNSSCRTNSTRLLDVNGVHLGTNTPGPVLRPTMSIGQILNRKLLLTGVFQQKQYEQEGFFGTNVG 413
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00001 413 Coils Coil 127 151 - -
Hetu2g00001 413 Coils Coil 20 40 - -
Hetu2g00001 413 MobiDBLite consensus disorder prediction 329 349 - -
Hetu2g00001 413 PANTHER HEAVY CHAIN, PUTATIVE, EXPRESSED-RELATED-RELATED 22 65 - GO:0005829(PANTHER)|GO:0009903(PANTHER)|GO:0009904(PANTHER)
Hetu2g00001 413 Coils Coil 189 209 - -
Hetu2g00001 413 Coils Coil 289 333 - -
Hetu2g00001 413 Coils Coil 45 65 - -
Hetu2g00001 413 MobiDBLite consensus disorder prediction 70 90 - -
Hetu2g00001 413 Pfam Weak chloroplast movement under blue light 111 337 IPR008545 -
Hetu2g00001 413 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00001 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3356390 Hetu Hetu2g00001 Hetu-Chr2:102126 Hetu31g02481 Hetu-Chr31:144741146
3529065 Hetu Hetu1g00002 Hetu-Chr1:190940 Hetu2g00001 Hetu-Chr2:102126
3578585 Hetu Hetu2g00001 Hetu-Chr2:102126 Hetu2g00080 Hetu-Chr2:2425445
3580284 Hetu Hetu2g00001 Hetu-Chr2:102126 Hetu3g00003 Hetu-Chr3:110066