AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00006 ATGGGCAACTACAGGTTCAGATTCTCAAACATCATACCTAACTCATGGTTTTACACTTCTACCGCAACTAATAACAACAAAATTACCAAAACACGACCCATCACAACTTCATCTTCTTCATCATCTGTATCATCACAACCCGCAATACACCACAGAAAATCCTATTATTTCACTAGAGAGTTAAGTGTACCCGACCCGACGACCACCCCTATTCAGGATCCCTCACCACCCGAACCGCGGAGAAAGTCATCCAAGAAAAAAAGACCTACTACCCCCAAGAAACCAATTCGGCGAAAATTGATTTCTCCTGAGATTGATCCAGCAGCTGCACGATGCAGCTACCGTAACGTACCGGAGTCTTCTGTTGAAACGGACTCCATAGAAATTTTCTCGGATAACGAAGTTTTGTTGCCCGAACAACTAAGTCCTCTTGGTTGTTCGTGCAAAACAAATTCGTTAAACGAGGAGGTTTATGCGAGAGTTGACCTCCCGCGGATAATAACCAAACCGGTCAAACAGGACGAATTCGGGTCTGGTAAATGGGTGGTTAATGGAGGAAGTCGGATGGGTAGTCCGGTTAGAAAAGCGAAAGGAAACGGTTACTCACCGCGGTTAGGGAACCGGGTTAAGGTAAATGGGATAAGGAGGAGGAACGGGAGCCGACGGAGCTTGTCCGAGAGTTTGGCGGTTGTGAAAACATCGGCGGATCCCGGGAGGGATTTTAAGGAATCAATGGTTGAGATGATAATGGAGAATAATATTAAGAGTTCAAAAGATTTGGAAGATCTTCTTGCATGTTATCTTGCATTGAATTCTGATGAGTATCATGACTTGATCATCAAGGTATTCAAGCAGATTTGGTTCGAGTGTACTGATATTAGACTGTAG 888 44.26 MGNYRFRFSNIIPNSWFYTSTATNNNKITKTRPITTSSSSSSVSSQPAIHHRKSYYFTRELSVPDPTTTPIQDPSPPEPRRKSSKKKRPTTPKKPIRRKLISPEIDPAAARCSYRNVPESSVETDSIEIFSDNEVLLPEQLSPLGCSCKTNSLNEEVYARVDLPRIITKPVKQDEFGSGKWVVNGGSRMGSPVRKAKGNGYSPRLGNRVKVNGIRRRNGSRRSLSESLAVVKTSADPGRDFKESMVEMIMENNIKSSKDLEDLLACYLALNSDEYHDLIIKVFKQIWFECTDIRL 295
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00006 295 ProSiteProfiles OVATE domain profile. 230 289 IPR006458 -
Hetu2g00006 295 MobiDBLite consensus disorder prediction 29 102 - -
Hetu2g00006 295 MobiDBLite consensus disorder prediction 81 95 - -
Hetu2g00006 295 PANTHER TRANSCRIPTION REPRESSOR OFP7-RELATED 39 290 IPR038933 GO:0045892(InterPro)
Hetu2g00006 295 MobiDBLite consensus disorder prediction 29 51 - -
Hetu2g00006 295 Pfam DNA-binding domain 1 46 IPR025830 GO:0003677(InterPro)
Hetu2g00006 295 Pfam Transcriptional repressor, ovate 234 289 IPR006458 -
Hetu2g00006 295 NCBIfam uncharacterized plant-specific domain TIGR01568 229 289 IPR006458 -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00006 - -
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Duplication type information

Select Gene1 Location1 Gene2 Location2 E-value Duplicated-type
3293317 Hetu Hetu10g01298 Hetu-Chr10:53612573 Hetu2g00006 Hetu-Chr2:387040
3297260 Hetu Hetu11g01243 Hetu-Chr11:48738621 Hetu2g00006 Hetu-Chr2:387040
3300870 Hetu Hetu12g01157 Hetu-Chr12:46414947 Hetu2g00006 Hetu-Chr2:387040
3356393 Hetu Hetu2g00006 Hetu-Chr2:387040 Hetu38g01349 Hetu-Chr38:80824062
3529067 Hetu Hetu1g00005 Hetu-Chr1:529255 Hetu2g00006 Hetu-Chr2:387040
3578587 Hetu Hetu2g00006 Hetu-Chr2:387040 Hetu2g00083 Hetu-Chr2:2652378
3580286 Hetu Hetu2g00006 Hetu-Chr2:387040 Hetu3g00006 Hetu-Chr3:370710
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Transcription factors information

Select Gene Hmm_acc Hmm_name Score E-value Regulatory Factors Family
Hetu Ovate 3.4e-24 No_clan TF OFP