AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00186 ATGGAAGCCGGTGACGTAACTTCACCGGCGTTAACATCTCCGTCGATAAAACCGATCAACAAAAACGCTATTCACAGAATCTGCTCCGGTCAAGTGATTCTGGACCTACCGTCCGCCGTTAAGGAGCTGGTGGAGAACAGCCTGGACGCAGGAGCCACCAGCATCGAGGTTTCGTTGAAAGAATACGGTGAAGAATCGTTTCAGGTTGTTGATAACGGTTGCGGCATTTCACCAAACAACTTCAAGGTTCTAGCACTCAAGCATCATACGTCGAAACTGTCCGATTTTCCTGACCTTCAATCATTGACGACTTTCGGGTTTAGAGGGGAGGCTCTTAGTGCTTTGTGTAACTTAGGGGAGTTGACAGTGGAAACGAGAACACAAAACGAGAAGGTTGCAACACACTTGAGTTTTGACCGGTTTGGTTTGGTTACCGATGAGAGAACAACCGCTCGGCAGGTTGGAACAACTGTTACCGTGAAAAAATTGTTCTCCAACTTGCCTGTGAGATGTAAGGAATTTCACCGTAACATTCGAAAGGAGTACGGGAAATTAATTTCGTTACTACATGCGTACGCTCTTACTGCAAAAGGGGTTCGTTTGGTGTGCAAAAATACGACCGGAAAAAACAAAAGTACAGTAGTACTTAAAACACAGGGAAGCGGTTCACTCAAAGATAACATCATTACAGTGTTTGGAACAAACACTTTCACTTGCTTAGAGCCTGTGAGTCTATTTATATCAGAAACATGCCAAGTGGATGGCTTTCTTTCTAAATCTGGTAATGGTAGTGGACGAAGTTTAGGTGATCGGCAATTTTTTTTCGTTAACGGCCGACCTGTTGACATGCCAAAAGTCAGCAAGCTTGTGAATGAATTGTATAGATCCGCAAACTCAAAGCAATATCCGGTTGCAATCATGAATTTTGTTGTTCCGACTAGGGTTTGTGATGTCAATGTGACCCCAGATAAACGAAAAGTATTTTTTACCGATGAAGGGTCGATTTTAAGTTCGTTAAAAGAAGCTTTGTTGAAGATATATTCCCCAAATCTTGCTAGCTTTTCAGTACAGAAAGCTGATAGTGATTTTAAAAAAGAAACTAGCAGTGTTGTGATTGAAGATAACGAGACCGTTGGATCGCCACCTGTTGTTAATCTGATTGACGTTGATGATTATAGTTTGTCGAAGAGAGATTTTACACCAAAATTTCATGGTGTGAAGAAAACCGATACCGTTACTAGGGGTTATAGTAAGAATCATACAGTTGTAACTAGCAACACTACTTATAATCGGCAGTCATCATCTTTATCATCATCGTACAACTCAACGACGCATAAAAGTGTTGATGAAGGAACGGATTCACCTCGATCTGTGAGTCGCGTTCAGTCACTGCTTACATCATTTGTTGCTGTAAACAAAAGAAAGCATGAAAGCATCGGTAATGCTTTATCTGAGGTCCCCGTTCTTAGAAACGGGCCTACCATTCGTCAATCAGTTGATCAAAGAAATAGTTCAAGTTCTGCATTTGCAAAATCTTTAGTGAAATGCCATGTGGTTGATGACTCTGATGAAGTTGACCAGAACGAATCAAAGTTAAAGCCTTTCAATCGTACTCTAGTGGATGAACACAATGATGATTTAGAAGCCTCTCCTGTTAGCGTTGTTAAAACTTCTGAACAAGTTGAAAAGGACATTATAAGAATTGAGACGCCTAAATCTATTTCAAAATCAGCGTTAGACGCTTCATCTCCCGAAAAAATTAATGATGATATGTCAACTCCGTTAACTGCTTCTGAACCACCTTTAGATTCACCGATGTCTTCTTCTCGTTCGAAGATGTGTTATGAGATGCAGTTCAGTTTTGAGGAATTAAAGAAAAAGAGGCAGCAAAAATTAGCAGCATTTCAAGCAAGCAAAAATACACTCAGAGTATCAAAGACTAACGGATGCTATGCTGATGCTTCATTAGAAATTTCTCAAGTGGTAGAAGAGGATGCTAAAGCTCAAGCTTTATCTGCAGCAGTGAGTGAATTAGAAAAGTTATTCAAGAAGGAAGATTTTGGCCGCATGAAGGTTATTGGGCAGTTCAATCTTGGATTTATCATTGGCAAGTTAGAGCAAGACCTCTTTATTGTAGATCAGCATGCTGCGGATGAGAAATACAATTACGAGCGTTTGTCACAGTCCACCATCTTAAACCAACAACCTTTACTAAGGCCAATTCCGGTAGAGTTATCACCTGAAGAAGAAATAATCGCATCAATCCACATGGATACTATCAGGAAAAATGGGTTTTCGTTAGAAGAAGACGCAGATGCTCCTCCTGGGAACCGCTATAAATTAAAAGCCGTCCCTTTTAGTAAAAACATAACTTTTGGTGCTGCAGATGTGAAGGAGCTTATATCTATTTTGGCTGATAGTGAAGGCGAATGTTCAATTATGGGTACTTATAAGATGGACACTACGGATTCGGTGTGTCCTCCAAGAGTACGTGCAATGTTGGCATCACGTGCCTGTAAATCGTCTGTTAGGATTGGAGATCCACTTGGAAGAAACGAGATGCAAAAGGTACTTCTCTTTTTCAACTTGTTTGACCAGTTAGAGATTAAACGTAACCCTGACCCATCTATAGTTGAACATTTGAGGGGCCTAAGATCACCATGGAATTGTCCACATGGCCGACCGACAATGCGGCACTTGGTGGATTTAAGGACCCTGCGCAAAAGGTCAAACGAAGACGATATAGTATTATAG 2754 40.96 MEAGDVTSPALTSPSIKPINKNAIHRICSGQVILDLPSAVKELVENSLDAGATSIEVSLKEYGEESFQVVDNGCGISPNNFKVLALKHHTSKLSDFPDLQSLTTFGFRGEALSALCNLGELTVETRTQNEKVATHLSFDRFGLVTDERTTARQVGTTVTVKKLFSNLPVRCKEFHRNIRKEYGKLISLLHAYALTAKGVRLVCKNTTGKNKSTVVLKTQGSGSLKDNIITVFGTNTFTCLEPVSLFISETCQVDGFLSKSGNGSGRSLGDRQFFFVNGRPVDMPKVSKLVNELYRSANSKQYPVAIMNFVVPTRVCDVNVTPDKRKVFFTDEGSILSSLKEALLKIYSPNLASFSVQKADSDFKKETSSVVIEDNETVGSPPVVNLIDVDDYSLSKRDFTPKFHGVKKTDTVTRGYSKNHTVVTSNTTYNRQSSSLSSSYNSTTHKSVDEGTDSPRSVSRVQSLLTSFVAVNKRKHESIGNALSEVPVLRNGPTIRQSVDQRNSSSSAFAKSLVKCHVVDDSDEVDQNESKLKPFNRTLVDEHNDDLEASPVSVVKTSEQVEKDIIRIETPKSISKSALDASSPEKINDDMSTPLTASEPPLDSPMSSSRSKMCYEMQFSFEELKKKRQQKLAAFQASKNTLRVSKTNGCYADASLEISQVVEEDAKAQALSAAVSELEKLFKKEDFGRMKVIGQFNLGFIIGKLEQDLFIVDQHAADEKYNYERLSQSTILNQQPLLRPIPVELSPEEEIIASIHMDTIRKNGFSLEEDADAPPGNRYKLKAVPFSKNITFGAADVKELISILADSEGECSIMGTYKMDTTDSVCPPRVRAMLASRACKSSVRIGDPLGRNEMQKVLLFFNLFDQLEIKRNPDPSIVEHLRGLRSPWNCPHGRPTMRHLVDLRTLRKRSNEDDIVL 917
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00186 917 ProSitePatterns DNA mismatch repair proteins mutL - hexB - PMS1 signature. 106 112 IPR014762 -
Hetu2g00186 917 MobiDBLite consensus disorder prediction 575 609 - -
Hetu2g00186 917 SUPERFAMILY ATPase domain of HSP90 chaperone-DNA topoisomerase II-histidine kinase 30 231 IPR036890 -
Hetu2g00186 917 MobiDBLite consensus disorder prediction 424 457 - -
Hetu2g00186 917 Pfam DNA mismatch repair protein, C-terminal domain 228 347 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Hetu2g00186 917 PANTHER DNA MISMATCH REPAIR PROTEIN MLH, PMS, MUTL 16 908 IPR038973 GO:0006298(PANTHER)|GO:0006298(InterPro)|GO:0016887(PANTHER)|GO:0016887(InterPro)|GO:0032300(InterPro)|GO:0032300(PANTHER)|GO:0032389(PANTHER)|GO:0140664(InterPro)
Hetu2g00186 917 Pfam MutL C terminal dimerisation domain 693 849 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Hetu2g00186 917 CDD HATPase-MutL-MLH-PMS-like 24 205 - -
Hetu2g00186 917 SMART DNA-mis-repair-2 228 348 IPR013507 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Hetu2g00186 917 Gene3D - 239 351 IPR014721 -
Hetu2g00186 917 NCBIfam DNA mismatch repair endonuclease MutL 16 450 IPR002099 GO:0005524(InterPro)|GO:0006298(InterPro)|GO:0030983(InterPro)
Hetu2g00186 917 FunFam Mismatch repair endonuclease pms1, putative 732 844 - -
Hetu2g00186 917 SMART MutL-C-2 692 849 IPR014790 GO:0005524(InterPro)|GO:0006298(InterPro)
Hetu2g00186 917 Gene3D - 12 232 IPR036890 -
Hetu2g00186 917 MobiDBLite consensus disorder prediction 574 609 - -
Hetu2g00186 917 FunFam Mismatch repair endonuclease pms1, putative 13 232 - -
Hetu2g00186 917 Gene3D - 732 844 IPR042121 -
Hetu2g00186 917 FunFam DNA mismatch repair protein PMS1 234 353 - -
Hetu2g00186 917 Gene3D - 695 900 IPR042120 -
Hetu2g00186 917 CDD MutL-Trans-hPMS-2-like 223 348 - -
Hetu2g00186 917 SUPERFAMILY Ribosomal protein S5 domain 2-like 210 348 IPR020568 -
Hetu2g00186 917 SUPERFAMILY DNA mismatch repair protein MutL 688 900 IPR037198 -
Hetu2g00186 917 Pfam Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase 38 139 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00186 K10858 DNA mismatch repair protein PMS2
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Event-related genes

Select Gene_1 Gene_2 Event_name
266785 Hetu1g00126 Hetu2g00186
268648 Hetu2g00186 Hetu3g00126
269383 Hetu3g00126 Hetu2g00186
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr27:33263262 Hetu2g00186 Hetu-Chr2:5953871 dispersed
Hetu Hetu-Chr2:5953871 Hetu42g01649 Hetu-Chr42:64828332 dispersed
Hetu Hetu-Chr1:4901708 Hetu2g00186 Hetu-Chr2:5953871 wgd
Hetu Hetu-Chr2:5953871 Hetu3g00126 Hetu-Chr3:4888124 wgd