AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00187 ATGCACTTCTTCCCGCGAAAAACCCTCTCTATAAACAAACACCCCATAAAAAAAAAACTCATACAACATAATCTCAACTACATTACCCAACGTGGCACCATGGACTCCACCTCACAAGAACTCAAACACAGAACCACCACCACCTCAGAAGACCAATCTCCAACCCTTCAACCCAACACAAAAACTCCAAAACAACGTATCCCGACACGTGGCGTCCGCTCACTGGCTGTCGGGATCGCGATCCCGTTAGCTCTAACCTTAGCCAACATATCCATCTTCGGCTGGAACCGAACCTACCGAACCATCCACAAACCGTTCTGGGTCCCACCGTTATGGGCTCTACATTTAACATGTTTGGGTTCGGCTTTTATTATGGGTTTATCGGCTTGGCTTGTTTGGGCTGAAGGCGGGTTTCATAAGAACCCGAGTGCGGTCGGGTTTTATCTTGGGCAGTTGGGGCTGAGTTTGGCTTGGGACCCGGTGTTTTTTAAGATGGGTGCGGCTAGGTTGGGTTTGTTGGTGTGTTTGGGTCAGATGGCGACTATGTGGTCTTGTTTGAAGATGTTTGGGCGGGTTAACCGGACCGCGGGTGATTTGGTGAAGATTTGTTTGGTTTGGTCTGGGTTTTTGACTCTTGTGAATTTGTATTTTGTGGTTTGA 660 48.18 MHFFPRKTLSINKHPIKKKLIQHNLNYITQRGTMDSTSQELKHRTTTTSEDQSPTLQPNTKTPKQRIPTRGVRSLAVGIAIPLALTLANISIFGWNRTYRTIHKPFWVPPLWALHLTCLGSAFIMGLSAWLVWAEGGFHKNPSAVGFYLGQLGLSLAWDPVFFKMGAARLGLLVCLGQMATMWSCLKMFGRVNRTAGDLVKICLVWSGFLTLVNLYFVV 219
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00187 219 FunFam translocator protein 2 71 219 - -
Hetu2g00187 219 Pfam TspO-MBR family 81 217 IPR004307 GO:0016020(InterPro)
Hetu2g00187 219 PANTHER PERIPHERAL-TYPE BENZODIAZEPINE RECEPTOR 59 217 IPR004307 GO:0016020(InterPro)
Hetu2g00187 219 CDD TSPO-MBR 75 218 IPR004307 GO:0016020(InterPro)
Hetu2g00187 219 Gene3D TspO-MBR protein 71 219 IPR038330 -
Hetu2g00187 219 MobiDBLite consensus disorder prediction 34 67 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00187 K05770 translocator protein
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Event-related genes

Select Gene_1 Gene_2 Event_name
268649 Hetu2g00187 Hetu3g00127
269384 Hetu3g00127 Hetu2g00187
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr28:31044209 Hetu2g00187 Hetu-Chr2:5962879 dispersed
Hetu Hetu-Chr2:5962879 Hetu30g00522 Hetu-Chr30:28997561 dispersed
Hetu Hetu-Chr2:5962879 Hetu3g00127 Hetu-Chr3:4894676 wgd