AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00229 ATGATGTTATGGAGCTGGGGCGATATGGTGGTGACCAAAGCGGTGGTGTTGGCAGTGGTGCCGGAGAAGGCATCGACAGTGACGGTGGTGGTTGCGGTGGCAGAGGTTGGGTCGCTAGCAGAGGTGGTTGGAGCCGTGGTGGTGGTTTCGACGAAGACTGTGCCTGTGCGGATAAGGCATCTCAATTACATACAGAGACACTGTCTCTATCTGCATTCTTACCTCAACCACCTAGGGCTGCCGGAGAAAATGGCGATCGCCGTCGCATCTTGCTGGATTAATGCGTTCGCCTCCGCTGGAGCTTCTCGCTCTTCACTCTCCTCTCAACGTCTCTTCTCCTCGCCGCCAATTTCAGCTACTCGGTTAGTCATTCCGAAAGCTACGAGTAAGCGTCAAAATCCGAAGAGAAATCAGAAGGAGAGTGCTCGTAAATCATCACCGGAGAAAGAAGCTAATATTCAAAAGCTTTCAAGAAGATCAAGAGATGAAAAGTATTCAAATGCTGATGATTACAGTGATACAAAAAGTGCAGAACAACAACCTCAGTCAACCGCCTTCAAGTCGTTTGGTACACAGAGAAAAAACGCCAAAGGCTTTATGGGTAACTTGAAGGACCAACAGGGCGAGACTACTAAAATTCAAGATGCTTCTTTTCTTAATGCTGTTGTGAAGGTTTATTGTACTCATACTGCACCTGATTATTCCCTCCCTTGGCAAAAGCAAAGACAATATACAAGTACAGGAAGTGCTTTCATGATTGGTGATGGACAGCTTTTGACAAATGCTCATTGTGTTGAACATAACACACAAGTCAAAGTCAAGAGAAGGGGGGATGATACCAAGTATGTGGCTAAGGTTTTAGCTAAAGGCATGGAATGTGACATAGCTTTGCTCTCAGTGGAAAATGAGAAATTCTGGAAAGGAGCCGAGCCACTTCAGTTCGGCCATTTGCCTCGTCTTCAGGATCCAGTTACTGTTGTAGGGTATCCACTTGGAGGAGACACCATTTCAGTGACCAAAGGAGTTGTTTCTCGAATAGAGGTCACCTCCTATGCTCATGGATCAGCTGAACTGTTGGGCATTCAGATTGATGCAGCAATTAATCCTGGTAATAGTGGTGGTCCTGCTTTCAATGATCAGGGAGAATGCATCGGTGTCGCATTTCAGGTGTACAGGTCCGATGATACTGAAAACATTGGGTATGTAATTCCAACAACTGTCGTGTCTCATTTCCTAGATGATTATGAGAGAAACGGGAAGTACACCGGTTTCCCTTCTCTTGGAATATTATTGCAAAAGTTAGAGAATCCAGCTTTACGTGCCTGCTTAAAAGTGCCATCTAACGAGGGTGTACTTGTCCGTCGTGTGGAGCCCACTTCTGGTGCCAGTAATGTCTTGAAGGAGGGGGATGTAATTGTAAGCTTCGATGGTGTAGAAGTCGGATCAGAAGGGACAGTCCCATTTCGATCAACTGAACGCATTGCATTCCGCTACCTCATTAGTCAAAAATTTACAGGGGATATAGCAGAACTTGGTATCATCAGATCAGGGGCTTTCATGAAAGTTCACACTGCTATGAATCCACGTGTTCATTTGGTACCGTATCATATCGAAGGGGGTCAGCCATCATACTTGATAGTAGCTGGCTTAGTTTTTACTCCTCTGTCAGAACCACTAATAGATGAGGAATGTGAAGACAGCATAGGGTTGAAATTATTGACAAAGGCACGGTATTCCATGGCGAGGTTCAAAGGAGAACAAATTGTGATTTTATCACAGGTATTGGCAAATGAAGTTAACATCGGGTATGAGGATATGAGCAATGAGCAGGTTCTGAAGTTCAATGGAACTCGAATAAAGAACATTCACCATCTTGCTCATCTTGTTGATTCATGCACAGACAAATACTTGGTTTTCGAATTTGAGGACAATTATCTTGCTGTTTTAGATCGAGAGGCTTCATCGGCTGCCTCACCCTGCATTCTTAAAGATTACGGCATCCCGTCAGAGAGGTCTTCTGATCTTCTAGAACCATACGTGGACCCCGTTGGGGAAAACCAAGTAATCGAACATCACGATCTTGGTGACAGTCCTGTCACAAATTCAGATTTCGGGTCTGATGGGCTTCAATGGGCTTGA 2139 45.07 MMLWSWGDMVVTKAVVLAVVPEKASTVTVVVAVAEVGSLAEVVGAVVVVSTKTVPVRIRHLNYIQRHCLYLHSYLNHLGLPEKMAIAVASCWINAFASAGASRSSLSSQRLFSSPPISATRLVIPKATSKRQNPKRNQKESARKSSPEKEANIQKLSRRSRDEKYSNADDYSDTKSAEQQPQSTAFKSFGTQRKNAKGFMGNLKDQQGETTKIQDASFLNAVVKVYCTHTAPDYSLPWQKQRQYTSTGSAFMIGDGQLLTNAHCVEHNTQVKVKRRGDDTKYVAKVLAKGMECDIALLSVENEKFWKGAEPLQFGHLPRLQDPVTVVGYPLGGDTISVTKGVVSRIEVTSYAHGSAELLGIQIDAAINPGNSGGPAFNDQGECIGVAFQVYRSDDTENIGYVIPTTVVSHFLDDYERNGKYTGFPSLGILLQKLENPALRACLKVPSNEGVLVRRVEPTSGASNVLKEGDVIVSFDGVEVGSEGTVPFRSTERIAFRYLISQKFTGDIAELGIIRSGAFMKVHTAMNPRVHLVPYHIEGGQPSYLIVAGLVFTPLSEPLIDEECEDSIGLKLLTKARYSMARFKGEQIVILSQVLANEVNIGYEDMSNEQVLKFNGTRIKNIHHLAHLVDSCTDKYLVFEFEDNYLAVLDREASSAASPCILKDYGIPSERSSDLLEPYVDPVGENQVIEHHDLGDSPVTNSDFGSDGLQWA 712
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00229 712 SUPERFAMILY Trypsin-like serine proteases 218 420 IPR009003 -
Hetu2g00229 712 Gene3D - 317 427 IPR043504 -
Hetu2g00229 712 PRINTS HtrA-DegQ protease family signature 465 477 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu2g00229 712 PRINTS HtrA-DegQ protease family signature 256 268 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu2g00229 712 PRINTS HtrA-DegQ protease family signature 357 374 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu2g00229 712 PRINTS HtrA-DegQ protease family signature 278 298 IPR001940 GO:0004252(InterPro)|GO:0006508(InterPro)
Hetu2g00229 712 MobiDBLite consensus disorder prediction 691 712 - -
Hetu2g00229 712 Pfam Trypsin-like peptidase domain 248 386 - -
Hetu2g00229 712 Gene3D - 530 681 IPR046449 -
Hetu2g00229 712 ProSiteProfiles PDZ domain profile. 412 480 IPR001478 GO:0005515(InterPro)
Hetu2g00229 712 Gene3D - 428 524 IPR036034 GO:0005515(InterPro)
Hetu2g00229 712 Gene3D - 203 306 IPR043504 -
Hetu2g00229 712 PANTHER - 128 679 - GO:0004252(PANTHER)
Hetu2g00229 712 MobiDBLite consensus disorder prediction 123 187 - -
Hetu2g00229 712 CDD PDZ-serine-protease 425 522 - -
Hetu2g00229 712 MobiDBLite consensus disorder prediction 133 171 - -
Hetu2g00229 712 Pfam PDZ domain 533 674 IPR041517 -
Hetu2g00229 712 SUPERFAMILY PDZ domain-like 448 527 IPR036034 GO:0005515(InterPro)
Hetu2g00229 712 MobiDBLite consensus disorder prediction 172 187 - -
Hetu2g00229 712 FunFam protease Do-like 9 307 417 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00229 K25896 protease Do-like 2, chloroplastic [EC:3.4.21.-]
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Event-related genes

Select Gene_1 Gene_2 Event_name
268660 Hetu2g00229 Hetu3g00176
269396 Hetu3g00176 Hetu2g00229
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr25:61835526 Hetu2g00229 Hetu-Chr2:7737734 dispersed
Hetu Hetu-Chr26:63324292 Hetu2g00229 Hetu-Chr2:7737734 dispersed
Hetu Hetu-Chr27:70815017 Hetu2g00229 Hetu-Chr2:7737734 dispersed
Hetu Hetu-Chr2:7737734 Hetu38g02750 Hetu-Chr38:176510018 dispersed
Hetu Hetu-Chr2:7737734 Hetu3g00176 Hetu-Chr3:7145850 wgd