AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00243 ATGGCGAAAAATCTCGTCAAATACTCCGTTGTGGATGCGTTCACCGATGCAGCGTTTAAAGGCAATCCGGCAGTCGTTTGCTGGTTAGACGACATATCGAAAGCCGATAACTGGATGCAATCAGTTGCGACCGAGTTCAACCTTCCGACCACCGGTTTTTTGTCGGTTGATCACCGTACAGAAAAACCAAGATTCAACCTCCGTTGGTTCACTCGTGTATCGGAGGTACCGCTTTGTGGTCATGCAACTTTAGCAGCTTCACACTTTGTGTTTGAGTCTGGATTAGTGGATTCTAACTCGGTTGAGTTCTCAACTCTGTCTGGAGTTTTGACTGCTAACCGGATTCCGGCTAACGAGATCAATGATTCGGAACATGGGTTTTACATAGAGTTGGATTTTCCGGTTGGGACGGTTTCTGTTTTCAAAGATGTTGAGGTTTCCGTGGTGTCGGAGATGTTAAATGGTGTTTCGGTTGTAGATGTTTTGATGAAGAACGTGTTTGATGATATTGTTGTGGTGCTTTCATCAGCGGAAGAAGTTGCGGATTTCAAGCCGCAGTTTGATAAGATCAAAGAGGGTCCGGGTAGGGCGGTGATAATTACGGCACGTGCACCTGACGGGTCGGGATTTGACTTTTATTCGCGCGTTTTTGGCCCGAAGATTGGGGTTGATGAGGATCCGGTCTGTGGCAGTGCACATTGCGCGTTAGCGCTCTATTGGCATGAGAAGTTGGGGAAATGTGATTTTGTTGCATATCAGGCATCAAGTAGAAGTGGCATATTACATGTCCATCTCGATAAGGAGAATCAAAGAGTACGTATTCGAGGTAAAGCCACCACCATCATGGAAGGATCTCTTTTGGTCTAA 867 46.25 MAKNLVKYSVVDAFTDAAFKGNPAVVCWLDDISKADNWMQSVATEFNLPTTGFLSVDHRTEKPRFNLRWFTRVSEVPLCGHATLAASHFVFESGLVDSNSVEFSTLSGVLTANRIPANEINDSEHGFYIELDFPVGTVSVFKDVEVSVVSEMLNGVSVVDVLMKNVFDDIVVVLSSAEEVADFKPQFDKIKEGPGRAVIITARAPDGSGFDFYSRVFGPKIGVDEDPVCGSAHCALALYWHEKLGKCDFVAYQASSRSGILHVHLDKENQRVRIRGKATTIMEGSLLV 288
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00243 288 PIRSF Ismrse-PhzF 4 288 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
Hetu2g00243 288 SUPERFAMILY Diaminopimelate epimerase-like 7 287 - -
Hetu2g00243 288 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 10 284 - -
Hetu2g00243 288 PANTHER PHENAZINE BIOSYNTHESIS PROTEIN 6 288 IPR003719 GO:0003824(InterPro)|GO:0005737(PANTHER)|GO:0009058(InterPro)|GO:0016853(PANTHER)
Hetu2g00243 288 Gene3D Diaminopimelate Epimerase; Chain A, domain 1 135 276 - -
Hetu2g00243 288 Pfam Phenazine biosynthesis-like protein 11 284 IPR003719 GO:0003824(InterPro)|GO:0009058(InterPro)
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00243 K06998 trans-2,3-dihydro-3-hydroxyanthranilate isomerase [EC:5.3.3.17]
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Event-related genes

Select Gene_1 Gene_2 Event_name
266803 Hetu1g00203 Hetu2g00243
268668 Hetu2g00243 Hetu3g00193
269404 Hetu3g00193 Hetu2g00243
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr2:8732795 Hetu3g00193 Hetu-Chr3:8057911 dispersed
Hetu Hetu-Chr2:8732795 Hetu2g00244 Hetu-Chr2:8738825 tandem
Hetu Hetu-Chr48:135375056 Hetu2g00243 Hetu-Chr2:8732795 transposed
Hetu Hetu-Chr1:8115623 Hetu2g00243 Hetu-Chr2:8732795 wgd
Hetu Hetu-Chr2:8732795 Hetu3g00192 Hetu-Chr3:8052992 wgd