AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00251 ATGCTCAACATTTTCAACAAAAACCTCCGGCGACTCTGCTCAAAGCTCCGGTGGCCGGTGCGCCGCCGTTCAAAGCCTAAAGTTATCATCAAAAGATTCGGAAGAACAAATTCTAGAAATCAAGATTCACTAAACTCAAATGGGTCAGCCACAATTCACCCAAATAACCATTTGGGTATCCCAAAATCACAAAATCCAATCAGAATTGCAACTTTTAATGCTGCTTTGTTCTCCATGGCACCTGCAGTCCCAGAGTTGACCAAAAAAGGTCAAAGCTTTGACCTTTTAGAAGATGATCAACATAATCAAGATGACCCAAAGGTAGTTTTTAATTCTACAGTGTCTTATGTTAATTCAAGGTCAAAATCTATGGTTGATAGGCCTAAAAGTATATTAAAGCAATCACCTTTACATTCAAGTTCAATGAGTAGTTCAGAAATGTTGACTAAACAGCAGAAATTTGCAAAGTCAAAGCTAAGAGTTTCGATTAATTTACCGGATAATGAGATCTCGTTGAAGCGAAGCGGGCAGTTGAGCTTTGTTACAGACGAAAATGAACCCGACCCGGATTCGAAAAGTGGTGGTTCCAAGGGTATAAGTAGGATTTTGAAAGGAAAAGGTGTTTTGAGATCACAGAATAGTTTTTCTGCAAGAGAGTTTGAAAGTCAAAGGAGGAGTTATAGGTCAACCAAGACTGTTGTTGAGGTTTTGAGAGAATTGGATGCTGATATATTGGCTTTACAAGATGTGAAAGCTGAAGAGGAAAAAGATATGAAACCTTTATCTGATTTGGCTGCTGCTTTGGGTATGAATTATGTTTTTGCTGAGAGTTGGGCACCCGAATATGGTAACGCGGTTTTGTCAAAATGGCCGATTAAACGATCGAAAGTTCAGAAGATTTTCGACGATTCGGATTTCAGGAACGTTTTAAAGGCGACAATTGATGTTCCACAAACCGGAGAAGTTGATTTTCATTGTACCCTTCTTGATCATCTTGACGAAAATTGGCGAATGAAGCAAATAAATGCAATCATCGAATCTAATGAGAGACCACACATCTTAGCCGGAGGTATCAACTCTCTTGATGAAACAGACTATTCGTCCGAAAGATGGACCGACATTGTTAAGTACTATGAAGAAATGGGAAAACCGACACCAAAAGTTGAAGTGATGAAGTACTTAAAGAGCAAACAGTACACCGATGCAAAGGATTTTGCAGGCGAATGTGAATCTGTAGTCATTATCGCTAAAGGCCAAAATGTGCAGGGTACATGCAAATACGGTACTAGGGTAGATTATATCTTGGTGTCACCCGATTCACCTTACAAGTTTGTTCCCGGTTCATATATGGTTTTATCATCAAAAGGAACTTCTGACCATCACATAGTCAAAGTTGAAGTAACAAAGGTAGATGAACCGATTCAACAACCGTACGTTAGAAGACATCGACATCCTAAACAAAAAGTTGTGAAGATAACAAATTCTAATTCATCAAAAGGGGCATGGAAAATGCAAACTTTAGATAGATAG 1530 38.89 MLNIFNKNLRRLCSKLRWPVRRRSKPKVIIKRFGRTNSRNQDSLNSNGSATIHPNNHLGIPKSQNPIRIATFNAALFSMAPAVPELTKKGQSFDLLEDDQHNQDDPKVVFNSTVSYVNSRSKSMVDRPKSILKQSPLHSSSMSSSEMLTKQQKFAKSKLRVSINLPDNEISLKRSGQLSFVTDENEPDPDSKSGGSKGISRILKGKGVLRSQNSFSAREFESQRRSYRSTKTVVEVLRELDADILALQDVKAEEEKDMKPLSDLAAALGMNYVFAESWAPEYGNAVLSKWPIKRSKVQKIFDDSDFRNVLKATIDVPQTGEVDFHCTLLDHLDENWRMKQINAIIESNERPHILAGGINSLDETDYSSERWTDIVKYYEEMGKPTPKVEVMKYLKSKQYTDAKDFAGECESVVIIAKGQNVQGTCKYGTRVDYILVSPDSPYKFVPGSYMVLSSKGTSDHHIVKVEVTKVDEPIQQPYVRRHRHPKQKVVKITNSNSSKGAWKMQTLDR 509
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00251 509 Coils Coil 237 257 - -
Hetu2g00251 509 Gene3D Endonuclease-exonuclease-phosphatase 213 469 IPR036691 -
Hetu2g00251 509 Pfam Endonuclease-Exonuclease-phosphatase family 224 460 IPR005135 GO:0003824(InterPro)
Hetu2g00251 509 MobiDBLite consensus disorder prediction 125 149 - -
Hetu2g00251 509 PANTHER CALCOFLUOR WHITE HYPERSENSITIVE PROTEIN PRECURSOR 16 466 IPR051916 GO:0005783(PANTHER)|GO:0006506(PANTHER)
Hetu2g00251 509 SUPERFAMILY DNase I-like 230 467 IPR036691 -
Hetu2g00251 509 MobiDBLite consensus disorder prediction 176 200 - -
Hetu2g00251 509 MobiDBLite consensus disorder prediction 37 59 - -
Hetu2g00251 509 FunFam Endonuclease-exonuclease-phosphatase family protein 218 470 - -
Hetu2g00251 509 MobiDBLite consensus disorder prediction 133 149 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00251 - -
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Event-related genes

Select Gene_1 Gene_2 Event_name
266807 Hetu1g00225 Hetu2g00251
268674 Hetu2g00251 Hetu3g00219
269410 Hetu3g00219 Hetu2g00251
415581 Hetu2g00251 Hetu31g02273
415582 Hetu2g00251 Hetu32g02304
415583 Hetu2g00251 Hetu33g02227
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr2:9020575 Hetu7g00524 Hetu-Chr7:15833843 dispersed
Hetu Hetu-Chr1:8899760 Hetu2g00251 Hetu-Chr2:9020575 wgd
Hetu Hetu-Chr2:9020575 Hetu3g00219 Hetu-Chr3:9164469 wgd
Hetu Hetu-Chr2:9020575 Hetu31g02273 Hetu-Chr31:132523475 wgd
Hetu Hetu-Chr2:9020575 Hetu32g02304 Hetu-Chr32:134665350 wgd
Hetu Hetu-Chr2:9020575 Hetu33g02227 Hetu-Chr33:126560668 wgd