AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

leaf

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00278 ATGATAGATTCATCATTTTTACTTGCATTTGAACCAATTTATTCTTCAAACATTCTAAAAATGGTGTTGTATACCGAGTCTTTATCAACACCACCACAGGCTACACGGGCTACTTGTTTTGACGACGGAAGCTACACAATGGAAAAGAAGACCATACCGAAATCATCGAATTCTGATACACCAAACCCGCCTTTGTACATTGTTTACCCTACCGAAAAAGGGACTTTTCCCGTTATACTCTTTCTCCATGGCTTTTCGATCCCTAATACATGTTATTGCGACCTCTTCGAGTTTATTGCCTCTCATGGTTACATTATCGTCGCTCCTGGTCAAACTTTGGTATTATACTTTATATATTTTGAGCTCTTGAAAGGTCTATGTGCATTTTCTGCTGTTGATGACGTGGACAATGCAGCCGAAGCAGCCAACTGGATAAACAAAAACCAAGGCGAAAACCTTCGACTTGTACTCCCAAATGATGTATCACCAGATCTTGAAAATGTAGCACTAGCCGGTCATAGTAAAGGAGGAAAAGCAGCATTTGCACTAGCACTAGGCCATGCTAATACGAGCCTTAAATTCAAGGCTCTTATCGGTTTAGATCCTGTTGCAGGCCGAGATACATCCAACAGGCTCGAACCCAAGATCTTAAACTACATACCCCAAAATTTTAAAATATCCATGCCTATAGCCCTAATTGGAACAGGCTTGGGTGATGATGGGTGTTGCGGGTGTTTTCCACCCGCAGCCCCTTGGGGATGTAACCATCCTTTTTTCTTTAACGAGTGCAAACCCCCTGTGTGTTACTTTGTAGCCAAGGACTTCGGTCACATGGACATGGTTGATGATTGGTTGATCAGGTTGTCGGGTATGTTTGTATGCAAGACTGGGAAGGGTTCGTATGCTGATATGAGAAGAGCTTGCGGAGGCGTTTTTGTTGCCTTTCTCAAGACTTATATGTTTGATGATGCCAAAGATCTCACCACTATTGTTGATTCACCCGGTACATTTGCTCCAATTAAGCTTGATCCAGTTTTATGGCTTCGATCATGA 1053 42.36 MIDSSFLLAFEPIYSSNILKMVLYTESLSTPPQATRATCFDDGSYTMEKKTIPKSSNSDTPNPPLYIVYPTEKGTFPVILFLHGFSIPNTCYCDLFEFIASHGYIIVAPGQTLVLYFIYFELLKGLCAFSAVDDVDNAAEAANWINKNQGENLRLVLPNDVSPDLENVALAGHSKGGKAAFALALGHANTSLKFKALIGLDPVAGRDTSNRLEPKILNYIPQNFKISMPIALIGTGLGDDGCCGCFPPAAPWGCNHPFFFNECKPPVCYFVAKDFGHMDMVDDWLIRLSGMFVCKTGKGSYADMRRACGGVFVAFLKTYMFDDAKDLTTIVDSPGTFAPIKLDPVLWLRS 350
leaf

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00278 350 PANTHER CHLOROPHYLLASE-2, CHLOROPLASTIC 21 346 - -
Hetu2g00278 350 SUPERFAMILY alpha-beta-Hydrolases 50 284 IPR029058 -
Hetu2g00278 350 Gene3D alpha-beta hydrolase 27 334 IPR029058 -
Hetu2g00278 350 Pfam Chlorophyllase 37 343 IPR017395 -
leaf

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00278 K08099 chlorophyllase [EC:3.1.1.14]
leaf

Event-related genes

Select Gene_1 Gene_2 Event_name
266823 Hetu1g00283 Hetu2g00278
268694 Hetu2g00278 Hetu3g00264
269430 Hetu3g00264 Hetu2g00278
leaf

Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr2:9835929 Hetu3g00266 Hetu-Chr3:10854761 dispersed
Hetu Hetu-Chr2:9835929 Hetu2g00279 Hetu-Chr2:9848713 tandem
Hetu Hetu-Chr1:10775181 Hetu2g00278 Hetu-Chr2:9835929 wgd
Hetu Hetu-Chr2:9835929 Hetu3g00264 Hetu-Chr3:10787996 wgd