AGRP Logo

AGRP

Asteraceae Genomic Research Platform

Gene Search

Example:
Example:

Gene details

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Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Hetu2g00420 ATGTCGTCCGCACACCAAGTGTTTGATGAAATGCCGAAGCCAGATTCGACTCCAACACCGATGCCGCCGGTGGATCTTTCGAAGTACTCCAAAAGGGTGCTGTTAAAAACGGTTCTGGATCGTGCAGACGGTGGTGTGGGGTTGGTTGATCAGAGAGTTGTGGTGGGCGGATGGGTTAAGTCGTCGAGAGAAATGAGGAAAGATCCTCTGCCTGCAACTCAACCGCCTGCTGGCGGTGATGCTAAACCGGTTACCGGAGGTAAAGATGTGAGATGCGTTGAAGTTTTTCAGTCACGGATTCCTTTTCTTCGAACCATTATAAAAGTATTCGGTGGGAACACTGCTCACAGTCACAACAAGGAGAAACTCGAATCAATCGGGCCGAAACCAGCACATCCTGCGATTTCAATCTTGCAAATTAGTGATGGTTCGTCTACAATCAGCCTGCAGGTGATGGTGGATTCTTCAATAGCTCCTCCGAGCCAGCTCATGCCTACGGGAACATGTATACTAGCGGAAGGTATTTTGCAGAAGCCGTCATTGCAGGGAAAACATGTGATCGAGCTCAAAGCTGAAAGATTGTTGCATATTGGGATAGTTGATCAAGAGAGTTATCCTTTATCAAAGAAAGGTTTACCTTTGGCTAGATTGAGAGATTGTGCTCACTTTAGACCTCGAACAACCACCGTTGCATCTGTTATGAAGGTACGAAACGGGCTAAATCAAGCCAGTCATACCTTTTTCCAGAATCACGGGTTTATTCATGTGGAGGTTCCGATTATAACTGCCACCAATACTGAAGGATTTTCGGACGTTTTCCAAGTTTCAACTTCAAAACATTCCACTAAAGAACCGAAAAAAGAACCACCTGTTTCAATGGACGATACCGAAAACATTAGTCTCGAAACAATAAAGCGTTCGATTGTTGAAAAAGCCAAAAAAGTTGAAGAACTTAAAAGAAGCGATAGCAATAAAGAAGCACTCGATGTAGCCGTTCAAGACCTTCATAAAACAAACTTATTGGCTGCTGAACTGGAAGCAAGATTGAAGTCAAACTCAAAGCAAAAATCAAAATCAAAGACGGATGATGGGTTCTTTTCTAATCAGGCTTTTCTTACTAGTTCTGGTAGTCTTCATCTTGAAAGCTGCGCGTCGGCACTTGGAAATGTGTATGCATTTGGGCCGAGATTTCAAGCAGATAAATCAGAATCGAAAAAACATTTAGCGGAAAAATGGATGGTTGAAACCGAGATGGCATTCTCAGAACTTGAGGATGCGATGAATTGCGCAGAAGATTTCTTGAAGTTTGTATCCAATTGGATTTCTGAAAATTGTTATGAAAATCTGTTTTTTCTTTCGAAAAGAGTTGACAGAACAATTATCGATCGGTTAAATTCATTGGCATCCACAATATTTGAAAAGATCACGTATACAACGGCAGTAGAAGTTTTGAGCAAGGTTACAGACAGAACTTTTGAAACCAAAATCCAATGGGGTGTTGCGCTAACAGAAGAACACGAAAGTTATCTGGTTGATGAGTTCTACAAGAAGCCCATAATTATTTATGATCATCGTAAAGAATTGAAACCCTTCAATGTGAGATTAAATGACGATGGGAAGACCGTTGCAGCCTTCGATGTGATTATACCAAAGGTTGGAGCTCTCATAAGGGGAAGCCAAAAAGAAGAACGCCTAAGCCATTTAACTAAAAGGATAAAGGAATTAGGATTGAGCAAAGATCAATACGAATGGTATTTAGATCTTCGAAAGCAAGGAACAGTGAAACATTCCGGGTTCAATGTTATGTTTGATGTTATGGTTCTTTTCGCTACTGGCCTTAATGATGTTCGAGATGCTGTTCCATTCCCCCGACATCATGGAAGAATCCATAATTAA 1896 41.56 MSSAHQVFDEMPKPDSTPTPMPPVDLSKYSKRVLLKTVLDRADGGVGLVDQRVVVGGWVKSSREMRKDPLPATQPPAGGDAKPVTGGKDVRCVEVFQSRIPFLRTIIKVFGGNTAHSHNKEKLESIGPKPAHPAISILQISDGSSTISLQVMVDSSIAPPSQLMPTGTCILAEGILQKPSLQGKHVIELKAERLLHIGIVDQESYPLSKKGLPLARLRDCAHFRPRTTTVASVMKVRNGLNQASHTFFQNHGFIHVEVPIITATNTEGFSDVFQVSTSKHSTKEPKKEPPVSMDDTENISLETIKRSIVEKAKKVEELKRSDSNKEALDVAVQDLHKTNLLAAELEARLKSNSKQKSKSKTDDGFFSNQAFLTSSGSLHLESCASALGNVYAFGPRFQADKSESKKHLAEKWMVETEMAFSELEDAMNCAEDFLKFVSNWISENCYENLFFLSKRVDRTIIDRLNSLASTIFEKITYTTAVEVLSKVTDRTFETKIQWGVALTEEHESYLVDEFYKKPIIIYDHRKELKPFNVRLNDDGKTVAAFDVIIPKVGALIRGSQKEERLSHLTKRIKELGLSKDQYEWYLDLRKQGTVKHSGFNVMFDVMVLFATGLNDVRDAVPFPRHHGRIHN 631
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Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Hetu2g00420 631 SUPERFAMILY Class II aaRS and biotin synthetases 217 625 IPR045864 -
Hetu2g00420 631 MobiDBLite consensus disorder prediction 65 85 - -
Hetu2g00420 631 Pfam tRNA synthetases class II (D, K and N) 364 625 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Hetu2g00420 631 PANTHER ASPARTYL-LYSYL-TRNA SYNTHETASE 30 629 - GO:0004816(PANTHER)|GO:0005739(PANTHER)|GO:0006421(PANTHER)
Hetu2g00420 631 Pfam tRNA synthetases class II (D, K and N) 225 280 IPR004364 GO:0000166(InterPro)|GO:0004812(InterPro)|GO:0005524(InterPro)|GO:0006418(InterPro)
Hetu2g00420 631 Gene3D Bira Bifunctional Protein; Domain 2 213 631 IPR045864 -
Hetu2g00420 631 Coils Coil 301 321 - -
Hetu2g00420 631 MobiDBLite consensus disorder prediction 1 24 - -
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Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Hetu2g00420 K01893 asparaginyl-tRNA synthetase [EC:6.1.1.22]
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Event-related genes

Select Gene_1 Gene_2 Event_name
266498 Hetu1g00582 Hetu2g00420
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Duplication type information

Select Gene1 Location1 Gene2 Location2 Duplicated-type
Hetu Hetu-Chr2:19425730 Hetu8g01473 Hetu-Chr8:61980831 dispersed
Hetu Hetu-Chr1:27865062 Hetu2g00420 Hetu-Chr2:19425730 wgd
Hetu Hetu-Chr2:19425730 Hetu3g00546 Hetu-Chr3:25179529 wgd